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Protein
Submitted name:

Nucleoporin SEH1

Gene

N320_08958

Organism
Buceros rhinoceros silvestris
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processProtein transportSAAS annotation, Transport

Names & Taxonomyi

Protein namesi
Submitted name:
Nucleoporin SEH1Imported
Gene namesi
ORF Names:N320_08958Imported
OrganismiBuceros rhinoceros silvestrisImported
Taxonomic identifieri175836 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeBucerotiformesBucerotidaeBuceros
Proteomesi
  • UP000054064 Componenti: Unassembled WGS sequence

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 115WD_REPEATS_REGIONInterPro annotationAdd BLAST115
Domaini237 – 278WD_REPEATS_REGIONInterPro annotationAdd BLAST42
Repeati237 – 269WDPROSITE-ProRule annotationAdd BLAST33

Sequence similaritiesi

Belongs to the WD repeat SEC13 family.SAAS annotation

Keywords - Domaini

RepeatSAAS annotation, WD repeatPROSITE-ProRule annotationSAAS annotation

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR037597 Nucleoporin_Seh1
IPR037363 Sec13/Seh1_fam
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PANTHERiPTHR11024 PTHR11024, 1 hit
PTHR11024:SF3 PTHR11024:SF3, 1 hit
PfamiView protein in Pfam
PF00400 WD40, 1 hit
SMARTiView protein in SMART
SM00320 WD40, 4 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 1 hit
PS50294 WD_REPEATS_REGION, 2 hits

Sequencei

Sequence statusi: Fragment.

A0A091HM35-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
VWDKSENGDW HCTASWKTHS GSVWRVTWAH PEFGQVLASC SFDRTAAVWE
60 70 80 90 100
EIVGESNDKL RGQSHWVKRT TLVDSRTSVT DVKFAPKHMG LMLATCSADG
110 120 130 140 150
VVRIYEAPDV MNLSQWSLQH EISCKLSCSC ISWNPSSSRA HPPMIAVGSD
160 170 180 190 200
DNSPNILAKV QIYEYNENTR KYAKAEALMT VTDPVHDIAF APNLGRSFHI
210 220 230 240 250
LAVATKDVRI FTLKPLRKEL TSSGGLTKFE IHIVAQFDNH NSQVWRVSWN
260 270 280 290 300
ITGTVLASSG DDGCVRLWKA NYMDNWKCTG ILKGNGSPVN GSSQQGIFNA
310 320 330 340 350
SLGSANTSLQ NSLNGSSASR YFFPPLDSPR AGSRWSSHAQ LLPPPPLIEH
360 370 380
SCDADTASLQ YPHPRRRCVS RPLNLLPENE GV
Length:382
Mass (Da):42,235
Last modified:November 26, 2014 - v1
Checksum:i49AB63795881C9CF
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1
Non-terminal residuei382Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KL517143 Genomic DNA Translation: KFO88393.1
RefSeqiXP_010132239.1, XM_010133937.1

Genome annotation databases

GeneIDi104491502

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KL517143 Genomic DNA Translation: KFO88393.1
RefSeqiXP_010132239.1, XM_010133937.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi104491502

Organism-specific databases

CTDi81929

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR037597 Nucleoporin_Seh1
IPR037363 Sec13/Seh1_fam
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PANTHERiPTHR11024 PTHR11024, 1 hit
PTHR11024:SF3 PTHR11024:SF3, 1 hit
PfamiView protein in Pfam
PF00400 WD40, 1 hit
SMARTiView protein in SMART
SM00320 WD40, 4 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 1 hit
PS50294 WD_REPEATS_REGION, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiA0A091HM35_BUCRH
AccessioniPrimary (citable) accession number: A0A091HM35
Entry historyiIntegrated into UniProtKB/TrEMBL: November 26, 2014
Last sequence update: November 26, 2014
Last modified: April 25, 2018
This is version 21 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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