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Protein

ATP-dependent RNA helicase RhlB

Gene

rhlB

Organism
Pectobacterium carotovorum subsp. brasiliense
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA.UniRule annotationSAAS annotation

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Catalytic activityi

ATP + H2O = ADP + phosphate.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHelicaseUniRule annotationSAAS annotationImported, Hydrolase, RNA-bindingUniRule annotationSAAS annotation
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ATP-dependent RNA helicase RhlBUniRule annotationSAAS annotation (EC:3.6.4.13UniRule annotationSAAS annotation)
Gene namesi
Name:rhlBUniRule annotation
ORF Names:IW01_13450Imported
OrganismiPectobacterium carotovorum subsp. brasilienseImported
Taxonomic identifieri180957 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesPectobacteriaceaePectobacterium
Proteomesi
  • UP000032862 Componenti: Unassembled WGS sequence

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Component of the RNA degradosome, which is a multiprotein complex involved in RNA processing and mRNA degradation.UniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 37Q_MOTIFInterPro annotationAdd BLAST29
Domaini40 – 219Helicase ATP-bindingInterPro annotationAdd BLAST180
Domaini245 – 390Helicase C-terminalInterPro annotationAdd BLAST146

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi9 – 37Q motifPROSITE-ProRule annotationAdd BLAST29

Sequence similaritiesi

Belongs to the DEAD box helicase family. RhlB subfamily.UniRule annotationSAAS annotation

Family and domain databases

CDDicd00079 HELICc, 1 hit
HAMAPiMF_00661 DEAD_helicase_RhlB, 1 hit
InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR000629 RNA-helicase_DEAD-box_CS
IPR023554 RNA_helicase_ATP-dep_RhlB
IPR014014 RNA_helicase_DEAD_Q_motif
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF00271 Helicase_C, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS00039 DEAD_ATP_HELICASE, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51195 Q_MOTIF, 1 hit

Sequencei

Sequence statusi: Complete.

A0A086ER13-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKTHLTEQK FSDFALHPQV IEALESKGFH NCTPIQALAL PLALSGRDVA
60 70 80 90 100
GQAQTGTGKT LAFLASTFHY LLSHPANAER QTNQPRALIM APTRELAVQI
110 120 130 140 150
HSDAEALSHA TGLKLGLAYG GDGYDKQLKV LESGVDILIG TTGRLIDYTK
160 170 180 190 200
QNHINLGAIQ VVVLDEADRM YDLGFIKDIR WLFRRMPATT QRLNMLFSAT
210 220 230 240 250
LSYRVRELAF EQMNNAEYVE VEPEQKTGHR IKEELFYPSN EEKMRLLQTL
260 270 280 290 300
LEEEWPDRCI IFANTKHRCE DIWGHLAADG HRVGLLTGDV AQKKRLRILE
310 320 330 340 350
EFTQGNLDIL VATDVAARGL HIPSVTHVFN YDLPDDCEDY VHRIGRTGRA
360 370 380 390 400
GQSGFSISLA CEEYALNLPA IETYIGHGIP VSKYNSDALM NDLPAPKRLT
410 420 430
RPPRSNNGPR RHNAPRRSGS GAPRNNRKRA D
Length:431
Mass (Da):48,222
Last modified:October 29, 2014 - v1
Checksum:iA8C974C2106A28A9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JPSO01000053 Genomic DNA Translation: KFF69127.1
RefSeqiWP_039277724.1, NZ_JPSO01000053.1

Genome annotation databases

EnsemblBacteriaiKFF69127; KFF69127; IW01_13450

Similar proteinsi

Entry informationi

Entry nameiA0A086ER13_PECCA
AccessioniPrimary (citable) accession number: A0A086ER13
Entry historyiIntegrated into UniProtKB/TrEMBL: October 29, 2014
Last sequence update: October 29, 2014
Last modified: March 28, 2018
This is version 25 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

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