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UniProtKB - A0A085TAW9 (A0A085TAW9_VIBCL)

Entry version 26 (25 May 2022)
Sequence version 1 (12 Sep 2018)
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Protein
Submitted name:

Type VI secretion system contractile sheath small subunit

Gene

tssB

Organism
Vibrio cholerae
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Type VI secretion system contractile sheath small subunitImported
Submitted name:
Type VI secretion system protein ImpBImported
Submitted name:
Type VI secretion system-associated proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:tssBImported
ORF Names:BC353_09065Imported, D6U24_11765Imported, ERS013186_01571Imported, ERS013198_01470Imported, ERS013199_00295Imported, ERS013200_00407Imported, ERS013201_01394Imported, ERS013202_00756Imported, ERS013206_01102Imported, ERS013207_02466Imported, EYB64_03305Imported, F0H40_13555Imported, F0M16_09945Imported, FLM02_12135Imported, FLM12_01605Imported, HPY07_13845Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiVibrio choleraeImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri666 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000043247 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence
  • UP000319979 Componenti: Unassembled WGS sequence
  • UP000471242 Componenti: Unassembled WGS sequence
  • UP000323225 Componenti: Unassembled WGS sequence
  • UP000043560 Componenti: Unassembled WGS sequence
  • UP000315424 Componenti: Unassembled WGS sequence
  • UP000041770 Componenti: Unassembled WGS sequence
  • UP000266701 Componenti: Unassembled WGS sequence
  • UP000509646 Componenti: Chromosome 2
  • UP000040416 Componenti: Unassembled WGS sequence
  • UP000323889 Componenti: Unassembled WGS sequence
  • UP000046067 Componenti: Unassembled WGS sequence
  • UP000294145 Componenti: Unassembled WGS sequence
  • UP000044503 Componenti: Unassembled WGS sequence
  • UP000045578 Componenti: Unassembled WGS sequence
  • UP000038065 Componenti: Unassembled WGS sequence

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

Identification of Orthologs from Complete Genome Data

More...OMAi		RINIRYV

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR008312, T6SS_TssB1

The PANTHER Classification System

More...PANTHERi		PTHR35850, PTHR35850, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF05591, T6SS_VipA, 1 hit

PIRSF; a whole-protein classification database

More...PIRSFi		PIRSF028301, UCP028301, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR03358, VI_chp_5, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A085TAW9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSKEGSVAPK ERINIKYIPA TGDAQAEVEL PLKTLVVGDF KGHAEQTPLE 
        60         70         80         90        100
ERATVTVDKN NFEAVMRESE LKITATVKNK LTDDENAELP VELNFKSLAD 
       110        120        130        140        150
FAPDAVASQV PELKKLIELR EALVALKGPL GNIPAFRERL QSLLNSEESR 
       160 
EKLLAELNLL SGQEEPQA
Length:168
Mass (Da):18,489
Last modified:September 12, 2018 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i21F42320AD93B5DE
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CWPO01000006 Genomic DNA Translation: CSB37528.1
CWQG01000002 Genomic DNA Translation: CSB64025.1
CWQA01000006 Genomic DNA Translation: CSB81430.1
CWQD01000004 Genomic DNA Translation: CSB92302.1
CWQX01000002 Genomic DNA Translation: CSB93630.1
CWQJ01000007 Genomic DNA Translation: CSB95614.1
CWQY01000002 Genomic DNA Translation: CSC04972.1
CWPZ01000014 Genomic DNA Translation: CSC33608.1
VTWK01000007 Genomic DNA Translation: KAA1006712.1
VUAA01000009 Genomic DNA Translation: KAA1254883.1
QZRB01000016 Genomic DNA Translation: MVD24035.1
CP053807 Genomic DNA Translation: QKU83566.1
MCBA01000046 Genomic DNA Translation: RGP90287.1
SISP01000003 Genomic DNA Translation: TBM45306.1
VIOJ01000002 Genomic DNA Translation: TQO70881.1
VIOS01000045 Genomic DNA Translation: TQP12984.1

NCBI Reference Sequences

More...RefSeqi		WP_000031391.1, NZ_WYCS01000063.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		AKO76425; AKO76425; EN12_14570
CPR29617; CPR29617; CPR29617
KFE27866; KFE27866; DN30_1328
PYC81660; PYC81660; C9J66_11050
RGP90287; RGP90287; BC353_09065

Database of genes from NCBI RefSeq genomes

More...GeneIDi		57741569

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		vcq:EN18_04260
vcx:VAA049_1801
vcz:VAB027_922

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CWPO01000006 Genomic DNA Translation: CSB37528.1
CWQG01000002 Genomic DNA Translation: CSB64025.1
CWQA01000006 Genomic DNA Translation: CSB81430.1
CWQD01000004 Genomic DNA Translation: CSB92302.1
CWQX01000002 Genomic DNA Translation: CSB93630.1
CWQJ01000007 Genomic DNA Translation: CSB95614.1
CWQY01000002 Genomic DNA Translation: CSC04972.1
CWPZ01000014 Genomic DNA Translation: CSC33608.1
VTWK01000007 Genomic DNA Translation: KAA1006712.1
VUAA01000009 Genomic DNA Translation: KAA1254883.1
QZRB01000016 Genomic DNA Translation: MVD24035.1
CP053807 Genomic DNA Translation: QKU83566.1
MCBA01000046 Genomic DNA Translation: RGP90287.1
SISP01000003 Genomic DNA Translation: TBM45306.1
VIOJ01000002 Genomic DNA Translation: TQO70881.1
VIOS01000045 Genomic DNA Translation: TQP12984.1
RefSeqiWP_000031391.1, NZ_WYCS01000063.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiAKO76425; AKO76425; EN12_14570
CPR29617; CPR29617; CPR29617
KFE27866; KFE27866; DN30_1328
PYC81660; PYC81660; C9J66_11050
RGP90287; RGP90287; BC353_09065
GeneIDi57741569
KEGGivcq:EN18_04260
vcx:VAA049_1801
vcz:VAB027_922

Phylogenomic databases

OMAiRINIRYV

Family and domain databases

InterProiView protein in InterPro
IPR008312, T6SS_TssB1
PANTHERiPTHR35850, PTHR35850, 1 hit
PfamiView protein in Pfam
PF05591, T6SS_VipA, 1 hit
PIRSFiPIRSF028301, UCP028301, 1 hit
TIGRFAMsiTIGR03358, VI_chp_5, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A085TAW9_VIBCL
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A085TAW9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 12, 2018
Last sequence update: September 12, 2018
Last modified: May 25, 2022
This is version 26 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
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