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Entry version 46 (29 Sep 2021)
Sequence version 1 (29 Oct 2014)
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Protein
Submitted name:

23S rRNA (Cytidine1920-2'-O)/16S rRNA (Cytidine1409-2'-O)-methyltransferase

Gene

yqxC

Organism
Bacillus mycoides
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionMethyltransferaseImported, Transferase

Protein family/group databases

Transport Classification Database

More...
TCDBi
1.C.109.1.5, the bacterial hemolysin a (b-hemolysin a) family

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
23S rRNA (Cytidine1920-2'-O)/16S rRNA (Cytidine1409-2'-O)-methyltransferaseImported
Submitted name:
Hemolysin TlyA family proteinImported
Submitted name:
Putative 2'-O-ribose RNA methyltransferaseImported (EC:2.1.1.-Imported)
Submitted name:
TlyA family RNA methyltransferaseImported
Submitted name:
TlyA family rRNA (Cytidine-2'-O)-methyltransferaseImported
Submitted name:
TlyA rRNA methyltransferase/hemolysin family proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:yqxCImported
ORF Names:B7492_22140Imported, BACI71_110233Imported, bcere0007_38730Imported, BG05_1841Imported, BLX04_06145Imported, BW900_02760Imported, CN600_02820Imported, COL41_16130Imported, COL71_16830Imported, DET55_1288Imported, DN409_21305Imported, E0M27_11480Imported, FC700_04835Imported, FC701_02550Imported, III_01305Imported, S3E15_03567Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBacillus mycoidesImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1405 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillusBacillus cereus group
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000194131 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence
  • UP000190696 Componenti: Unassembled WGS sequence
  • UP000192932 Componenti: Chromosome
  • UP000006976 Componenti: Unassembled WGS sequence
  • UP000292292 Componenti: Unassembled WGS sequence
  • UP000191139 Componenti: Unassembled WGS sequence
  • UP000305524 Componenti: Unassembled WGS sequence
  • UP000256530 Componenti: Unassembled WGS sequence
  • UP000437562 Componenti: Unassembled WGS sequence
  • UP000323503 Componenti: Chromosome
  • UP000001909 Componenti: Chromosome
  • UP000305485 Componenti: Unassembled WGS sequence
  • UP000031884 Componenti: Chromosome
  • UP000237521 Componenti: Unassembled WGS sequence
  • UP000220392 Componenti: Unassembled WGS sequence
  • UP000222321 Componenti: Unassembled WGS sequence

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini6 – 71S4InterPro annotationAdd BLAST66

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_058015_3_0_9

Database of Orthologous Groups

More...
OrthoDBi
1670446at2

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00165, S4, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.10.290.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR004538, Haemolysin_A/TlyA
IPR002877, rRNA_MeTrfase_FtsJ_dom
IPR002942, S4_RNA-bd
IPR036986, S4_RNA-bd_sf
IPR029063, SAM-dependent_MTases

The PANTHER Classification System

More...
PANTHERi
PTHR32319:SF0, PTHR32319:SF0, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01728, FtsJ, 1 hit
PF01479, S4, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF005578, TlyA, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00363, S4, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF53335, SSF53335, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR00478, tly, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A084J369-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSVKKERVDV LLVERGLIET REKAKRAVMA GLVYANEMRL DKPGEKISQD
60 70 80 90 100
TEITVKGQVM PYVSRGGYKL EKALETFQLD LQDKVMIDIG SSTGGFTDCA
110 120 130 140 150
LQNGAKLSYA LDVGYNQLAW KLRQDERVVV MERTNFRYVT PADLERGLPQ
160 170 180 190 200
FASIDVSFIS LRLILPVLKT MLMPNGDVAA LIKPQFEAGR EQVGKKGIVR
210 220 230 240 250
DRKVHEAVVE MIVDFALKEG YNIEGLTFSP ITGGDGNIEF LIHLKWHGER
260 270
ENGENHSPVS IEQVVTEAHD VLKQKGKGE
Length:279
Mass (Da):31,188
Last modified:October 29, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i84953508000FDFFC
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP009692 Genomic DNA Translation: AJH20105.1
CP020743 Genomic DNA Translation: ARJ23734.1
ACLX01000082 Genomic DNA Translation: EEK71620.1
AHEV01000009 Genomic DNA Translation: EJR43230.1
MUAI01000001 Genomic DNA Translation: OOR08874.1
MUAS01000002 Genomic DNA Translation: OOR64147.1
MRWU01000003 Genomic DNA Translation: OSX94969.1
NUCL01000002 Genomic DNA Translation: PEK96536.1
NVFI01000019 Genomic DNA Translation: PFX94200.1
NVGU01000013 Genomic DNA Translation: PGA09437.1
CP031071 Genomic DNA Translation: QEL86791.1
QTTY01000028 Genomic DNA Translation: REF24887.1
SJQD01000005 Genomic DNA Translation: TBX57012.1
SZOC01000032 Genomic DNA Translation: TKI51057.1
SZOD01000059 Genomic DNA Translation: TKI87239.1
CABWMC010000003 Genomic DNA Translation: VXB33882.1

NCBI Reference Sequences

More...
RefSeqi
WP_002015074.1, NZ_VEAE01000002.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AIW83427; AIW83427; bwei_0761
AJH20105; AJH20105; BG05_1841
ARJ23734; ARJ23734; B7492_22140
EEK71620; EEK71620; bcere0007_38730
EJR43230; EJR43230; III_01305
OOR08874; OOR08874; BW900_02760
OOR64147; OOR64147; BLX04_06145
OSX94969; OSX94969; S3E15_03567
PEK96536; PEK96536; CN600_02820
PFX94200; PFX94200; COL41_16130
PGA09437; PGA09437; COL71_16830
REF24887; REF24887; DET55_1288

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
22938393

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
bmyo:BG05_1841
bww:bwei_0761

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|1053227.3.peg.1335
fig|1405.14.peg.503

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP009692 Genomic DNA Translation: AJH20105.1
CP020743 Genomic DNA Translation: ARJ23734.1
ACLX01000082 Genomic DNA Translation: EEK71620.1
AHEV01000009 Genomic DNA Translation: EJR43230.1
MUAI01000001 Genomic DNA Translation: OOR08874.1
MUAS01000002 Genomic DNA Translation: OOR64147.1
MRWU01000003 Genomic DNA Translation: OSX94969.1
NUCL01000002 Genomic DNA Translation: PEK96536.1
NVFI01000019 Genomic DNA Translation: PFX94200.1
NVGU01000013 Genomic DNA Translation: PGA09437.1
CP031071 Genomic DNA Translation: QEL86791.1
QTTY01000028 Genomic DNA Translation: REF24887.1
SJQD01000005 Genomic DNA Translation: TBX57012.1
SZOC01000032 Genomic DNA Translation: TKI51057.1
SZOD01000059 Genomic DNA Translation: TKI87239.1
CABWMC010000003 Genomic DNA Translation: VXB33882.1
RefSeqiWP_002015074.1, NZ_VEAE01000002.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein family/group databases

TCDBi1.C.109.1.5, the bacterial hemolysin a (b-hemolysin a) family

Genome annotation databases

EnsemblBacteriaiAIW83427; AIW83427; bwei_0761
AJH20105; AJH20105; BG05_1841
ARJ23734; ARJ23734; B7492_22140
EEK71620; EEK71620; bcere0007_38730
EJR43230; EJR43230; III_01305
OOR08874; OOR08874; BW900_02760
OOR64147; OOR64147; BLX04_06145
OSX94969; OSX94969; S3E15_03567
PEK96536; PEK96536; CN600_02820
PFX94200; PFX94200; COL41_16130
PGA09437; PGA09437; COL71_16830
REF24887; REF24887; DET55_1288
GeneIDi22938393
KEGGibmyo:BG05_1841
bww:bwei_0761
PATRICifig|1053227.3.peg.1335
fig|1405.14.peg.503

Phylogenomic databases

HOGENOMiCLU_058015_3_0_9
OrthoDBi1670446at2

Family and domain databases

CDDicd00165, S4, 1 hit
Gene3Di3.10.290.10, 1 hit
InterProiView protein in InterPro
IPR004538, Haemolysin_A/TlyA
IPR002877, rRNA_MeTrfase_FtsJ_dom
IPR002942, S4_RNA-bd
IPR036986, S4_RNA-bd_sf
IPR029063, SAM-dependent_MTases
PANTHERiPTHR32319:SF0, PTHR32319:SF0, 1 hit
PfamiView protein in Pfam
PF01728, FtsJ, 1 hit
PF01479, S4, 1 hit
PIRSFiPIRSF005578, TlyA, 1 hit
SMARTiView protein in SMART
SM00363, S4, 1 hit
SUPFAMiSSF53335, SSF53335, 1 hit
TIGRFAMsiTIGR00478, tly, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A084J369_BACMY
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A084J369
Secondary accession number(s): A0A0B5RZ84
, A0A653PVJ9, C2Q0M4, J8IXD8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 29, 2014
Last sequence update: October 29, 2014
Last modified: September 29, 2021
This is version 46 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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