Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

50S ribosomal protein L5

Gene

rplE

Organism
Shewanella xiamenensis
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.UniRule annotation

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotationImported, RNA-binding, rRNA-bindingUniRule annotation, tRNA-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L5UniRule annotation
Gene namesi
Name:rplEUniRule annotation
ORF Names:ABT47_06725Imported, SXM_0238Imported
OrganismiShewanella xiamenensisImported
Taxonomic identifieri332186 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000027719 Componenti: Unassembled WGS sequence
  • UP000094602 Componenti: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.UniRule annotation

Structurei

3D structure databases

SMRiA0A073KYG0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini24 – 80Ribosomal_L5InterPro annotationAdd BLAST57
Domaini84 – 177Ribosomal_L5_CInterPro annotationAdd BLAST94

Sequence similaritiesi

Belongs to the universal ribosomal protein uL5 family.UniRule annotation

Family and domain databases

Gene3Di3.30.1440.10, 1 hit
HAMAPiMF_01333_B Ribosomal_L5_B, 1 hit
InterProiView protein in InterPro
IPR002132 Ribosomal_L5
IPR020930 Ribosomal_L5_bac-type
IPR031309 Ribosomal_L5_C
IPR020929 Ribosomal_L5_CS
IPR022803 Ribosomal_L5_dom_sf
IPR031310 Ribosomal_L5_N
PANTHERiPTHR11994 PTHR11994, 1 hit
PfamiView protein in Pfam
PF00281 Ribosomal_L5, 1 hit
PF00673 Ribosomal_L5_C, 1 hit
PIRSFiPIRSF002161 Ribosomal_L5, 1 hit
SUPFAMiSSF55282 SSF55282, 1 hit
PROSITEiView protein in PROSITE
PS00358 RIBOSOMAL_L5, 1 hit

Sequencei

Sequence statusi: Complete.

A0A073KYG0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAKLHDKYQE TVVAELTQKF GYTSVMQVPR IEKITLNMGV GEAVADKKVM
60 70 80 90 100
EHAVRDMTAI AGQKPVVTVA RKSVAGFKIR EGYPIGCKVT LRGERMWEFL
110 120 130 140 150
ERLVDIAIPR IRDFRGLSAK AFDGRGNYAM GVREQIIFPE IDYDKIDKIR
160 170
GMDIVITTSA KTDEEGRALL DAFNFPFKK
Length:179
Mass (Da):20,232
Last modified:October 1, 2014 - v1
Checksum:iF09C8BDCFA28AED7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JGVI01000079 Genomic DNA Translation: KEK27403.1
LDOA01000001 Genomic DNA Translation: ODR85030.1
RefSeqiWP_011070624.1, NZ_QFLG01000045.1

Genome annotation databases

EnsemblBacteriaiKEK27403; KEK27403; SXM_0238
ODR85030; ODR85030; ABT47_06725
PATRICifig|332186.8.peg.1410

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JGVI01000079 Genomic DNA Translation: KEK27403.1
LDOA01000001 Genomic DNA Translation: ODR85030.1
RefSeqiWP_011070624.1, NZ_QFLG01000045.1

3D structure databases

SMRiA0A073KYG0
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiKEK27403; KEK27403; SXM_0238
ODR85030; ODR85030; ABT47_06725
PATRICifig|332186.8.peg.1410

Family and domain databases

Gene3Di3.30.1440.10, 1 hit
HAMAPiMF_01333_B Ribosomal_L5_B, 1 hit
InterProiView protein in InterPro
IPR002132 Ribosomal_L5
IPR020930 Ribosomal_L5_bac-type
IPR031309 Ribosomal_L5_C
IPR020929 Ribosomal_L5_CS
IPR022803 Ribosomal_L5_dom_sf
IPR031310 Ribosomal_L5_N
PANTHERiPTHR11994 PTHR11994, 1 hit
PfamiView protein in Pfam
PF00281 Ribosomal_L5, 1 hit
PF00673 Ribosomal_L5_C, 1 hit
PIRSFiPIRSF002161 Ribosomal_L5, 1 hit
SUPFAMiSSF55282 SSF55282, 1 hit
PROSITEiView protein in PROSITE
PS00358 RIBOSOMAL_L5, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A073KYG0_9GAMM
AccessioniPrimary (citable) accession number: A0A073KYG0
Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2014
Last sequence update: October 1, 2014
Last modified: October 10, 2018
This is version 24 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again