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Entry version 64 (02 Jun 2021)
Sequence version 1 (01 Oct 2014)
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Protein

tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ

Gene

trmJ

Organism
Pseudomonas aeruginosa
Status
Unreviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.

UniRule annotation

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionMethyltransferaseUniRule annotationARBA annotation, Transferase
Biological processtRNA processingUniRule annotation
LigandS-adenosyl-L-methionineUniRule annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJUniRule annotation (EC:2.1.1.200UniRule annotation)
Alternative name(s):
tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferaseUniRule annotation
tRNA Cm32/Um32 methyltransferaseUniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:trmJUniRule annotationImported
ORF Names:CAZ10_17805Imported, CGU42_10930Imported, DT376_14870Imported, DZ962_03245Imported, E4V10_04010Imported, ECC04_008785Imported, H2O03_22775Imported, HW05_11380Imported, IPC1164_08660Imported, IPC116_03310Imported, IPC1295_13700Imported, IPC1298_02265Imported, IPC1323_03275Imported, IPC1481_30600Imported, IPC1505_10125Imported, IPC1509_02625Imported, IPC151_02630Imported, IPC36_21355Imported, IPC582_15630Imported, IPC620_11410Imported, IPC737_18710Imported, IPC90_16350Imported, NCTC13621_00530Imported, PA52Ts2_5199Imported, PAMH19_1263Imported, RW109_RW109_01970Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPseudomonas aeruginosaImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri287 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000043988 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence
  • UP000297623 Componenti: Unassembled WGS sequence
  • UP000539598 Componenti: Unassembled WGS sequence
  • UP000253594 Componenti: Unassembled WGS sequence
  • UP000502341 Componenti: Chromosome
  • UP000258262 Componenti: Unassembled WGS sequence
  • UP000194857 Componenti: Unassembled WGS sequence
  • UP000297361 Componenti: Unassembled WGS sequence
  • UP000285672 Componenti: Unassembled WGS sequence
  • UP000298413 Componenti: Unassembled WGS sequence
  • UP000344659 Componenti: Unassembled WGS sequence
  • UP000297560 Componenti: Unassembled WGS sequence
  • UP000233777 Componenti: Chromosome mainomosome
  • UP000283921 Componenti: Unassembled WGS sequence
  • UP000286578 Componenti: Unassembled WGS sequence
  • UP000284767 Componenti: Unassembled WGS sequence
  • UP000278438 Componenti: Unassembled WGS sequence
  • UP000297925 Componenti: Unassembled WGS sequence
  • UP000297232 Componenti: Unassembled WGS sequence
  • UP000063433 Componenti: Chromosome
  • UP000297845 Componenti: Unassembled WGS sequence
  • UP000297376 Componenti: Unassembled WGS sequence
  • UP000297499 Componenti: Unassembled WGS sequence
  • UP000297579 Componenti: Unassembled WGS sequence
  • UP000284878 Componenti: Unassembled WGS sequence
  • UP000216659 Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

CytoplasmUniRule annotation

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homodimer.

UniRule annotation

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
287.DR97_4052

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein Data Bank in Europe - Knowledge Base

More...
PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini5 – 155SpoU_methylaseInterPro annotationAdd BLAST151

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.ARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG0565, Bacteria

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.40.1280.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR029028, Alpha/beta_knot_MTases
IPR004384, RNA_MeTrfase_TrmJ/LasT
IPR001537, SpoU_MeTrfase
IPR029026, tRNA_m1G_MTases_N

The PANTHER Classification System

More...
PANTHERi
PTHR42786, PTHR42786, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00588, SpoU_methylase, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF004808, LasT, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF75217, SSF75217, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR00050, rRNA_methyl_1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A072ZPM2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLDRIRVVLV NTSHPGNIGG AARAMKNMGL SQLVLVQPES FPHGDAVARA
60 70 80 90 100
SGATDILDAA RVVDTLEEAL SGCSVVLGTS ARDRRIPWPL LDPRECATTC
110 120 130 140 150
LEHLEANGEV ALVFGREYAG LTNEELQRCQ FHVHIPSDPE FGSLNLAAAV
160 170 180 190 200
QVLTYEVRMA WLAAQGKPTK MEKFESTSML NTELVTADEL ELYYAHLERT
210 220 230 240 250
LIDIGFLDPE KPRHLMSRLR RLYGRSAISK LEMNILRGIL TETQKVARGL

SYKRSDD
Length:257
Mass (Da):28,486
Last modified:October 1, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i3360B51B30E39A9B
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP008861 Genomic DNA Translation: ALY65493.1
CDAZ01000004 Genomic DNA Translation: CEI04318.1
JACEPH010000012 Genomic DNA Translation: MBA4951754.1
NFFZ01000008 Genomic DNA Translation: OTI60934.1
NMRQ01000021 Genomic DNA Translation: OZO17795.1
CP051768 Genomic DNA Translation: QJE86600.1
QORE01000452 Genomic DNA Translation: RCI74082.1
QVBL01000003 Genomic DNA Translation: RFJ77235.1
NSNB01000001 Genomic DNA Translation: RPL97699.1
NSNE01000007 Genomic DNA Translation: RPM16204.1
NSOX01000004 Genomic DNA Translation: RPP43317.1
NSTV01000006 Genomic DNA Translation: RPW72234.1
NTAF01000008 Genomic DNA Translation: RQI13364.1
LT969520 Genomic DNA Translation: SOV27884.1
RWMN01000004 Genomic DNA Translation: TEE23030.1
RWMJ01000001 Genomic DNA Translation: TEE30963.1
RWNG01000030 Genomic DNA Translation: TEF36027.1
RWOM01000001 Genomic DNA Translation: TEH39612.1
RWPP01000003 Genomic DNA Translation: TEJ22166.1
RWQP01000005 Genomic DNA Translation: TEK58184.1
RWSC01000001 Genomic DNA Translation: TEM94281.1
RWTJ01000001 Genomic DNA Translation: TEP00603.1
RWUZ01000008 Genomic DNA Translation: TER50183.1
SRHR01000004 Genomic DNA Translation: TGA91545.1
RHMD02000001 Genomic DNA Translation: TGB26601.1
CAADJP010000002 Genomic DNA Translation: VFT08141.1

NCBI Reference Sequences

More...
RefSeqi
WP_003092842.1, NZ_WYAF01000016.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
CEI04318; CEI04318; PAMH19_1263
OTI60934; OTI60934; CAZ10_17805
OZO17795; OZO17795; CGU42_10930
RCI74082; RCI74082; DT376_14870
RFJ77235; RFJ77235; DZ962_03245
SOV27884; SOV27884; RW109_RW109_01970

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|287.1477.peg.1143

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP008861 Genomic DNA Translation: ALY65493.1
CDAZ01000004 Genomic DNA Translation: CEI04318.1
JACEPH010000012 Genomic DNA Translation: MBA4951754.1
NFFZ01000008 Genomic DNA Translation: OTI60934.1
NMRQ01000021 Genomic DNA Translation: OZO17795.1
CP051768 Genomic DNA Translation: QJE86600.1
QORE01000452 Genomic DNA Translation: RCI74082.1
QVBL01000003 Genomic DNA Translation: RFJ77235.1
NSNB01000001 Genomic DNA Translation: RPL97699.1
NSNE01000007 Genomic DNA Translation: RPM16204.1
NSOX01000004 Genomic DNA Translation: RPP43317.1
NSTV01000006 Genomic DNA Translation: RPW72234.1
NTAF01000008 Genomic DNA Translation: RQI13364.1
LT969520 Genomic DNA Translation: SOV27884.1
RWMN01000004 Genomic DNA Translation: TEE23030.1
RWMJ01000001 Genomic DNA Translation: TEE30963.1
RWNG01000030 Genomic DNA Translation: TEF36027.1
RWOM01000001 Genomic DNA Translation: TEH39612.1
RWPP01000003 Genomic DNA Translation: TEJ22166.1
RWQP01000005 Genomic DNA Translation: TEK58184.1
RWSC01000001 Genomic DNA Translation: TEM94281.1
RWTJ01000001 Genomic DNA Translation: TEP00603.1
RWUZ01000008 Genomic DNA Translation: TER50183.1
SRHR01000004 Genomic DNA Translation: TGA91545.1
RHMD02000001 Genomic DNA Translation: TGB26601.1
CAADJP010000002 Genomic DNA Translation: VFT08141.1
RefSeqiWP_003092842.1, NZ_WYAF01000016.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5GM8X-ray2.20A/B/C/D1-167[»]
5GMBX-ray1.62A1-167[»]
5GMCX-ray1.70A/B/C/D1-167[»]
ModBaseiSearch...
SWISS-MODEL-WorkspaceiSubmit a new modelling project...
PDBe-KBiSearch...

Protein-protein interaction databases

STRINGi287.DR97_4052

Genome annotation databases

EnsemblBacteriaiCEI04318; CEI04318; PAMH19_1263
OTI60934; OTI60934; CAZ10_17805
OZO17795; OZO17795; CGU42_10930
RCI74082; RCI74082; DT376_14870
RFJ77235; RFJ77235; DZ962_03245
SOV27884; SOV27884; RW109_RW109_01970
PATRICifig|287.1477.peg.1143

Phylogenomic databases

eggNOGiCOG0565, Bacteria

Family and domain databases

Gene3Di3.40.1280.10, 1 hit
InterProiView protein in InterPro
IPR029028, Alpha/beta_knot_MTases
IPR004384, RNA_MeTrfase_TrmJ/LasT
IPR001537, SpoU_MeTrfase
IPR029026, tRNA_m1G_MTases_N
PANTHERiPTHR42786, PTHR42786, 1 hit
PfamiView protein in Pfam
PF00588, SpoU_methylase, 1 hit
PIRSFiPIRSF004808, LasT, 1 hit
SUPFAMiSSF75217, SSF75217, 1 hit
TIGRFAMsiTIGR00050, rRNA_methyl_1, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A072ZPM2_PSEAI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A072ZPM2
Secondary accession number(s): A0A1S1BY51
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2014
Last sequence update: October 1, 2014
Last modified: June 2, 2021
This is version 64 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources
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