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Entry version 19 (11 Dec 2019)
Sequence version 1 (01 Oct 2014)
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Protein
Submitted name:

Uncharacterized protein

Gene

GSCOC_T00029409001

Organism
Coffea canephora (Robusta coffee)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Uncharacterized proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:GSCOC_T00029409001Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCoffea canephora (Robusta coffee)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri49390 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaeasteridslamiidsGentianalesRubiaceaeIxoroideaeGardenieae complexBertiereae - Coffeeae cladeCoffeeaeCoffea
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000295252 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

NucleusSAAS annotation

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini836 – 887SANTInterPro annotationAdd BLAST52
Domaini1055 – 1106SANTInterPro annotationAdd BLAST52

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 69DisorderedSequence analysisAdd BLAST69
Regioni86 – 289DisorderedSequence analysisAdd BLAST204
Regioni956 – 980DisorderedSequence analysisAdd BLAST25
Regioni1032 – 1055DisorderedSequence analysisAdd BLAST24
Regioni1196 – 1248DisorderedSequence analysisAdd BLAST53
Regioni1271 – 1313DisorderedSequence analysisAdd BLAST43
Regioni1402 – 1426DisorderedSequence analysisAdd BLAST25
Regioni1467 – 1529DisorderedSequence analysisAdd BLAST63

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili467 – 494Sequence analysisAdd BLAST28

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi22 – 36BasicSequence analysisAdd BLAST15
Compositional biasi150 – 166PolarSequence analysisAdd BLAST17
Compositional biasi174 – 192PolarSequence analysisAdd BLAST19
Compositional biasi207 – 222PolarSequence analysisAdd BLAST16
Compositional biasi236 – 284PolarSequence analysisAdd BLAST49
Compositional biasi1223 – 1248PolarSequence analysisAdd BLAST26
Compositional biasi1280 – 1296PolyampholyteSequence analysisAdd BLAST17
Compositional biasi1408 – 1426PolarSequence analysisAdd BLAST19
Compositional biasi1502 – 1529PolarSequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00167 SANT, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR009057 Homeobox-like_sf
IPR001005 SANT/Myb
IPR017884 SANT_dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00249 Myb_DNA-binding, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00717 SANT, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46689 SSF46689, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51293 SANT, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A068TU32-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPPEPLPWDR KDFFKERKHE RQEPYHHHHH HHHLHPTGGG GGGGGGGYGG
60 70 80 90 100
GIGGFGGGPR WREPPHPHPH PYHYASPRWV SDFRYRPPPG YGKQGGRHLY
110 120 130 140 150
PEESSHGFVP SRPSDRVFED ENCRASVSGK YSRSNRESRG PFGQKDWKGQ
160 170 180 190 200
SWEATPSPNA PGRPLETSDQ HRSVDEMQTC TSSHPHLDSA NSWDQSHLKD
210 220 230 240 250
QHEKSSGVVN ALGSSGQRLE RENSLGSMDW KPLKWTRSGS LSSRGSGFSH
260 270 280 290 300
SSSSKSMGAD SNEMKAEVQP SNVTPVQSPS GNAATPVAAP AAAYETSAGA
310 320 330 340 350
SEEMSSRKKP RLGWGEGLAK YEKKKVEGVD DTTLKNGTII CSSSREPLHL
360 370 380 390 400
HSSHLADKSP RITAFSDCAS PATPSSVGCS SSPGLEEKQF IKAPSVDNEA
410 420 430 440 450
TNLSPSIVSQ DHRDHIEGAT FDLENLDLAE SGHFNSAINE LLLSDDLISV
460 470 480 490 500
DSGFVKSTAI NKLLVWKGDV LKKLEMTESE IDRLEGELKT LASIPESSCH
510 520 530 540 550
HPAVSSSLPM DCFSKPAEEQ DVTSSISHRP ALLDLGSSGH NDAEKMPNVL
560 570 580 590 600
VDDHTEVKDE DVDSPGSATS KFVEVVSSGK DASPSELGNE PGIDSVCISN
610 620 630 640 650
TDCAMSKNLE LRYVGNGVHE DNGGENFQLV ASCSPTHLDE ISLCDDKELK
660 670 680 690 700
LCESIFASNK ESASRAAEVF NKLLPADLCK FDISGVCSLK SNPMVKENFL
710 720 730 740 750
RRKRFQQFKE RCIALKYRAL QHLWKADVCS LSMRRFRVKS HKKLDLSLRT
760 770 780 790 800
VLNSSQKHRS SFRSRLSSHD GNVSSGSNTV MMNFISKLLS DSQVKPCRDT
810 820 830 840 850
LKMPAMILDK KEKMISRFIS SNGLVEDPSA VEKERSMINP WTSEEKEMFM
860 870 880 890 900
DMLAVHGKDF TKIASFLVHK TTADCVEFYY KNHKSDCFKK TKKHPEYPKQ
910 920 930 940 950
GKSYTANNYL VASGKRWHCE ANAASLDILG AASAIAANVD HGMEIQQTPT
960 970 980 990 1000
SKYLLGRSSD YKSSKGDNGL LERPSSLDAD NNERETVAAD VLAGICGSLS
1010 1020 1030 1040 1050
SEAMSSCITS AVDPGEGYRE WKYSRVGSSS RLPLTPEAMQ NGDEETCSDE
1060 1070 1080 1090 1100
SCGEMDPTDW TDEEKAIFIQ AVSSYGKDFA MISRYVSTRS REQCKVFFSK
1110 1120 1130 1140 1150
ARKCLGLDMI SPGPGNVVRR DASGGSDTDD VGVVETGSIT CSEKSGVKLE
1160 1170 1180 1190 1200
VDLPCPEVKL NIEPDSAGLA NVNPDLNRLE EISGTGDRAA VEAGLQSKNL
1210 1220 1230 1240 1250
TDDSQMEEKP EQEADGSGDI QSVPSGEVEQ GTAVTTTGVG DTSDSANTLD
1260 1270 1280 1290 1300
TQIHSGALEK RDEHLDAEME GLSPVSWESS INDRKEKDDA NQKDVNGMDQ
1310 1320 1330 1340 1350
DLKSTPHGDI SGDRQIGVLE TDSAGKPCVG PIEQNGFPAP MKSVPQSCAV
1360 1370 1380 1390 1400
KCQTPNEATL SALEVVKISG EQGHQVTRVG EKLRSGSSLL GSVDPCHILK
1410 1420 1430 1440 1450
GYPLPPSTTR EVNGNSSCRR SATPQSIPKL GNNFHRDCHL ARDSYLQKCN
1460 1470 1480 1490 1500
GVKHYSSIAE LPFKFREQSR DTNPDHQSGS LSDVEKPRRN GDVKLFGQIL
1510 1520 1530 1540 1550
TKPSYQPKSS SSRQQNGGNE NQQSKIGKPL GTKFASDQAI GGNLSQTKLD
1560 1570 1580 1590 1600
RNNLLGTENL PVRSFGYWDG SRIQTGLHSL PDSAMLLAKY PAAFGNYVLP
1610 1620 1630 1640 1650
SSKLEQLPVH GVNNGERNLN GSAVFPAREI GSSNAAAAAA ADYQAYRSRE
1660 1670 1680 1690 1700
LQPFTLDMKQ RQDAVLSEMH RRNGFDVVSG MQQAARGLVG INVVTAIKMH
1710 1720 1730
YSKAEQLNGG QTASIIREDD SWRGKGSIGR
Length:1,730
Mass (Da):188,323
Last modified:October 1, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iF8739C4B22D80931
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
HG739088 Genomic DNA Translation: CDO99731.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
CDO99731; CDO99731; GSCOC_T00029409001

Gramene; a comparative resource for plants

More...
Gramenei
CDO99731; CDO99731; GSCOC_T00029409001

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HG739088 Genomic DNA Translation: CDO99731.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblPlantsiCDO99731; CDO99731; GSCOC_T00029409001
GrameneiCDO99731; CDO99731; GSCOC_T00029409001

Family and domain databases

CDDicd00167 SANT, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR001005 SANT/Myb
IPR017884 SANT_dom
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 2 hits
PROSITEiView protein in PROSITE
PS51293 SANT, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A068TU32_COFCA
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A068TU32
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2014
Last sequence update: October 1, 2014
Last modified: December 11, 2019
This is version 19 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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