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UniProtKB - A0A067RHM4 (A0A067RHM4_ZOONE)

Entry version 24 (31 Jul 2019)
Sequence version 1 (03 Sep 2014)
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Protein

Structural maintenance of chromosomes protein

Gene

L798_07518

Organism
Zootermopsis nevadensis (Dampwood termite)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Structural maintenance of chromosomes proteinUniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:L798_07518Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiZootermopsis nevadensis (Dampwood termite)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri136037 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Ecdysozoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Polyneoptera › Dictyoptera › Blattodea › Blattoidea › Termitoidae › Termopsidae › Zootermopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000027135 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

NucleusUniRule annotation

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		136037.KDR18667

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini518 – 637SMC hingeInterPro annotationAdd BLAST120

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni243 – 274DisorderedSequence analysisAdd BLAST32
Regioni401 – 436DisorderedSequence analysisAdd BLAST36

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili167 – 187Sequence analysisAdd BLAST21
Coiled coili195 – 228Sequence analysisAdd BLAST34
Coiled coili311 – 359Sequence analysisAdd BLAST49
Coiled coili680 – 700Sequence analysisAdd BLAST21
Coiled coili721 – 748Sequence analysisAdd BLAST28
Coiled coili802 – 822Sequence analysisAdd BLAST21
Coiled coili841 – 879Sequence analysisAdd BLAST39
Coiled coili904 – 938Sequence analysisAdd BLAST35
Coiled coili1033 – 1074Sequence analysisAdd BLAST42

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi404 – 436PolyampholyteSequence analysisAdd BLAST33

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the SMC family.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

Identification of Orthologs from Complete Genome Data

More...OMAi		YMEAIVV

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR027417 P-loop_NTPase
IPR003395 RecF/RecN/SMC_N
IPR024704 SMC
IPR029683 SMC1A_metazoan
IPR010935 SMC_hinge
IPR036277 SMC_hinge_sf

The PANTHER Classification System

More...PANTHERi		PTHR18937:SF170 PTHR18937:SF170, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF06470 SMC_hinge, 1 hit
PF02463 SMC_N, 1 hit

PIRSF; a whole-protein classification database

More...PIRSFi		PIRSF005719 SMC, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00968 SMC_hinge, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF52540 SSF52540, 1 hit
SSF75553 SSF75553, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A067RHM4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MYNLAMPAVL VSIEVENFKS YKGNVTIGPL KSFTAVIGPN GSGKSNFMDA 
        60         70         80         90        100
VSFVMGEKTS SLRVKRLSDL IHGASIGQPV SRTASVTAVF ELGDGTLKRF 
       110        120        130        140        150
TRVVQGSSSE HRINGEAVTS QVYLQDLEKL GINAKAKNFL VFQGAVESIA 
       160        170        180        190        200
MKNPKERTAL FEEISGSGVL KDEYERLRSE MLKAEEETQF TYQKKKGIAA 
       210        220        230        240        250
ERKEAKLEKE EAEKYQRLKE DLSDKQVELQ LFRLYHNEKD IEHHEQDLER 
       260        270        280        290        300
KQHEQKKVEK RKEKAEEQLK EKKKECGKLG RELAKVEQDI RELEVEINKK 
       310        320        330        340        350
RPAFIKSKER VAHIQKKLDS ARKSLAQAKK ADAAHEQDIR ELEDELAEVD 
       360        370        380        390        400
KKRKEYEDMV AGESQSQGKD VHLEDAQVAE YHRLKEEAGK QSAMYLQQLD 
       410        420        430        440        450
SVNREQKSDQ DRLDNEFRKK AELENRLRQK GHEKDEAMKR IEKLAEHIKS 
       460        470        480        490        500
SETALEEQRR MREELQSDVG MSKERVQELQ RELESVVEQL GDARVDKHED 
       510        520        530        540        550
SRRKKKQEIV ENFKRLYPGV FDRMINMCQP IHKRYNVAIT KVLGKYMEAI 
       560        570        580        590        600
VVDTEKTARQ CIQYLKEQML EPETFLPLDY IQAKPLKERL RSIKEPRNVK 
       610        620        630        640        650
LLFDVLHYDP LDIKRAVLFA TNNALVCETP EDAMKVAYEM DKNRYDAVAL 
       660        670        680        690        700
DGTFYQKSGI ISGGSLDLAR KAKRWDEKHM SQLKATKEKL TEELRDSMKR 
       710        720        730        740        750
SRKESELNTV DSQIRGLETR LKYSKTDKEK TLQQIQQLEL ELDALKNKSE 
       760        770        780        790        800
NFGPTIAEIE KTMFDRGNEI QRIKESMNNV EDKVFTSFCE QIGVANIRQY 
       810        820        830        840        850
EERELRTQQE RMKKRMEFEN QRNRILNQLE FEKTRDTSNN VLRWERAVQD 
       860        870        880        890        900
DEDELETAKQ SEQKQMADIE RDMRRLDVLK SERLAKKSEV DNMEDLIGKA 
       910        920        930        940        950
RREVGAIAKD IQAAQKQVAA LEAKIEQKRG ERHAILKQCK MEDIAIPMQR 
       960        970        980        990       1000
GNMEDIAQET SAMETSETSS METSSTSTQQ IYDRESRIVI DYTQLPDNLK 
      1010       1020       1030       1040       1050
ELDEPEDVKK MGDRLNRAIA ELQNTIQRIQ APNMRAMQKL DMAREKLQET 
      1060       1070       1080       1090       1100
NEEFETARRH ARKAKQNFER VKKERHDRFM NCFEHVANEI DNIYKSLAKN 
      1110       1120       1130       1140       1150
QSAQAFLGPE NPEEPYLDGI NYNCVAPGKR FQPMSNLSGG EKTVAALALL 
      1160       1170       1180       1190       1200
FAIHSYQPSP FFVLDEIDAA LDNTNIGKVA SYIRDKTASL QTIVISLKEE 
      1210       1220       1230 
FYSHADALIG ICPDVGECLI SKVLTLDLTQ FQSHMEAAK
Length:1,239
Mass (Da):143,097
Last modified:September 3, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iECD5172AE115F095
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
KK852678 Genomic DNA Translation: KDR18667.1

Genome annotation databases

Ensembl metazoan genome annotation project

More...EnsemblMetazoai		KDR18667; KDR18667; L798_07518

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KK852678 Genomic DNA Translation: KDR18667.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi136037.KDR18667

Genome annotation databases

EnsemblMetazoaiKDR18667; KDR18667; L798_07518

Phylogenomic databases

OMAiYMEAIVV

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR003395 RecF/RecN/SMC_N
IPR024704 SMC
IPR029683 SMC1A_metazoan
IPR010935 SMC_hinge
IPR036277 SMC_hinge_sf
PANTHERiPTHR18937:SF170 PTHR18937:SF170, 1 hit
PfamiView protein in Pfam
PF06470 SMC_hinge, 1 hit
PF02463 SMC_N, 1 hit
PIRSFiPIRSF005719 SMC, 1 hit
SMARTiView protein in SMART
SM00968 SMC_hinge, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
SSF75553 SSF75553, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A067RHM4_ZOONE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A067RHM4
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 3, 2014
Last sequence update: September 3, 2014
Last modified: July 31, 2019
This is version 24 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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