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UniProtKB - A0A061M1M5 (A0A061M1M5_BIFLN)

Entry version 26 (11 Dec 2019)
Sequence version 1 (03 Sep 2014)
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Protein
Submitted name:

Exo-beta-1,3-galactanase

Gene

BL1,3Gal

Organism
Bifidobacterium longum subsp. longum
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionGlycosidaseImported, Hydrolase

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Exo-beta-1,3-galactanaseImported (EC:3.2.1.145Imported)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:BL1,3GalImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBifidobacterium longum subsp. longumImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1679 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Actinobacteria › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium ›

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei1251 – 1273HelicalSequence analysisAdd BLAST23

GO - Cellular componenti

Complete GO annotation on QuickGO ...

Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 33Sequence analysisAdd BLAST33
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500160268534 – 1278Sequence analysisAdd BLAST1245

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini815 – 882Ig-like_bactInterPro annotationAdd BLAST68
Domaini902 – 1025F5/8 type CInterPro annotationAdd BLAST124
Domaini1131 – 1204Ig-like_bactInterPro annotationAdd BLAST74

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1207 – 1242DisorderedSequence analysisAdd BLAST36

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.60.120.260, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR000421, FA58C
IPR008979, Galactose-bd-like_sf
IPR023296, Glyco_hydro_beta-prop_sf
IPR022038, Ig-like_bact

Pfam protein domain database

More...Pfami		View protein in Pfam
PF07523, Big_3, 2 hits
PF00754, F5_F8_type_C, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF49785, SSF49785, 1 hit
SSF75005, SSF75005, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A061M1M5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKINNKGKGA LIAAITAAAT LLSCGLAAAS ASAAGVDYLP TIGQVPTYTK 
        60         70         80         90        100
FQPTADPGKN ASDYFQPYWY AKNANDNGGT HIQAHGGQVV KVGDAYYWYG 
       110        120        130        140        150
EDRSNGYDNS PGVHAYMSTD LYNWTDLGVA LRAVTSKSQL TDKSNADYAY 
       160        170        180        190        200
FDKAYNLTKS DGSVDAAKAD AIFPYLNTNP DQDGDGAVDS VQGIFERPKI 
       210        220        230        240        250
IYNKKNKQYV LWWHSDGSTT PGGSNYARAL AGVAVSDNPA GPFTMVGAYR 
       260        270        280        290        300
LPNQNNWKEA AGNPSWGENG DSRDMTVFVD PKDDSAYVLY SSEANATLYI 
       310        320        330        340        350
AKLNDDYTNV VKTTNVDQSE GQKQYSADGQ YPYILADATT DAPVRGEDFQ 
       360        370        380        390        400
IVKQNGSLEA PAVFQYDGRY NIIASGATGW APNKQTYYTA DSMLGNWTRG 
       410        420        430        440        450
VEKDDVNENT WYNNMPEGAD GLLSVGDTRG TTFGSQSASV LAVDQEKGHF 
       460        470        480        490        500
IYLGDRWDSG KADSTYVWLP LTIGENGTIE MHNPAQEGEP DGWDLSYWGN 
       510        520        530        540        550
HGSAKGKLVN WTVETGDDLP KTVNTGGTVT LPDTVNVKEG DDTIATKVTW 
       560        570        580        590        600
NVEGGTAVSK STKAAGNTYA FNVPGAYTIT GTLAESSNFN PGRTFRRTID 
       610        620        630        640        650
VSCSNPISGS WKEAHWKGGS ACQVSASGGA YDFTITDNAN RGVWTDRNEG 
       660        670        680        690        700
SAVYQPDALD VNETLETTVK PLDLGGNGDP RAGLVVRNGL ADANGGKGYA 
       710        720        730        740        750
TLLASLSGVY MQYDSNADGY IDKETSHVGT GFGDQVQLKL ERISTDTLKG 
       760        770        780        790        800
YWRASANDEW QDVATVTLTG ADVTGLDAGA FATSNSNAGA FTVAFNGTAF 
       810        820        830        840        850
GSQTAAVESI AAKGPETTIA KRQTLAHKDV TVTATLTNGK TRVLEPDEYT 
       860        870        880        890        900
LEGFDTTKLG EQTVTVRLVT DSSVTATLTV TVESNLARLF CSSAAASKYE 
       910        920        930        940        950
PASSWASAST ADLTCDNNLS TNWSNWGTGD TSPWLSYTFD KAYQLGKLSV 
       960        970        980        990       1000
AVDKAKGEAA PKSFTVSYLA EDNATWTDAT LPAVTVNGAA GAVTEADVSA 
      1010       1020       1030       1040       1050
LPATKGIRLN FTYADGNDYA KIAEVRIAEG EATPEPQPSS NANLADLTVD 
      1060       1070       1080       1090       1100
GKTVDGFSAD ITEYAGALAG DAASYPTVEA TAADAKATVQ VEQASTENSG 
      1110       1120       1130       1140       1150
VATVTVTAED GTAETYTVTF GELPQLAELA VEVTKDSYQV GDKFNAADVK 
      1160       1170       1180       1190       1200
VSAIYKVGDT ETLRKLIDPT DGDLKFTGFD SATAGTKTIT VSYRGVNATF 
      1210       1220       1230       1240       1250
EVTVTATEVT PGPGEQKPGD TNNPGNTAKP GNTATNEPAA NGAAPLSNTG 
      1260       1270 
AAVAAIAVVV VALAAAAGAL LVIRKRRA
Length:1,278
Mass (Da):134,674
Last modified:September 3, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i25260B3707CB530E
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
BR001188 Genomic DNA Translation: FAA01136.1

NCBI Reference Sequences

More...RefSeqi		WP_013583000.1, NZ_JGYZ01000008.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BR001188 Genomic DNA Translation: FAA01136.1
RefSeqiWP_013583000.1, NZ_JGYZ01000008.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Family and domain databases

Gene3Di2.60.120.260, 1 hit
InterProiView protein in InterPro
IPR000421, FA58C
IPR008979, Galactose-bd-like_sf
IPR023296, Glyco_hydro_beta-prop_sf
IPR022038, Ig-like_bact
PfamiView protein in Pfam
PF07523, Big_3, 2 hits
PF00754, F5_F8_type_C, 1 hit
SUPFAMiSSF49785, SSF49785, 1 hit
SSF75005, SSF75005, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A061M1M5_BIFLN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A061M1M5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 3, 2014
Last sequence update: September 3, 2014
Last modified: December 11, 2019
This is version 26 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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