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Entry version 68 (07 Apr 2021)
Sequence version 1 (03 Sep 2014)
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Protein

23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD

Gene

rlmD

Organism
Escherichia coli
Status
Unreviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.UniRule annotation

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi81Iron-sulfur (4Fe-4S)UniRule annotation1
Metal bindingi87Iron-sulfur (4Fe-4S)UniRule annotation1
Metal bindingi90Iron-sulfur (4Fe-4S)UniRule annotation1
Metal bindingi162Iron-sulfur (4Fe-4S)UniRule annotation1
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei265S-adenosyl-L-methionineUniRule annotation1
Binding sitei294S-adenosyl-L-methionine; via carbonyl oxygenUniRule annotation1
Binding sitei299S-adenosyl-L-methionineUniRule annotation1
Binding sitei315S-adenosyl-L-methionineUniRule annotation1
Binding sitei342S-adenosyl-L-methionineUniRule annotation1
Binding sitei363S-adenosyl-L-methionineUniRule annotation1
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei389PROSITE-ProRule annotation1
Active sitei389NucleophileUniRule annotation1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionMethyltransferaseUniRule annotationARBA annotation, Transferase
Biological processrRNA processingUniRule annotationARBA annotation
Ligand4Fe-4SUniRule annotationARBA annotation, Iron, Iron-sulfur, Metal-binding, S-adenosyl-L-methionineUniRule annotationARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmDUniRule annotation (EC:2.1.1.190UniRule annotation)
Alternative name(s):
23S rRNA(m5U1939)-methyltransferaseUniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rlmDUniRule annotationImported
Synonyms:rumAImported
ORF Names:A8C65_06240Imported, A9R57_06940Imported, A9X72_05225Imported, ACU57_24390Imported, AM464_05630Imported, AUQ13_17560Imported, BANRA_01306Imported, BANRA_04319Imported, BHS87_15760Imported, BJJ90_05240Imported, BMA87_05475Imported, BON72_07100Imported, BON75_14035Imported, BON76_10405Imported, BON94_04385Imported, BUE81_06950Imported, BvCms12BK_05153Imported, BvCms2454_02057Imported, BvCmsHHP019_05025Imported, BvCmsKKP061_04396Imported, BvCmsKSP011_02429Imported, BvCmsKSP024_03363Imported, BvCmsKSP026_00097Imported, BvCmsKSP067_03645Imported, BvCmsNSP047_01562Imported, BW690_04950Imported, BZL31_00845Imported, C5F72_05950Imported, C5F73_22215Imported, C5N07_06180Imported, C9342_20115Imported, C9E25_03300Imported, CR538_05470Imported, D2184_01110Imported, D2185_02760Imported, D3821_11115Imported, D3O91_13450Imported, D3Y67_06455Imported, D9C99_02895Imported, D9D20_04475Imported, D9D44_11685Imported, D9F87_14905Imported, D9H68_17315Imported, D9J11_17760Imported, D9J52_13545Imported, D9Z28_07560Imported, DAH34_10975Imported, DAH37_01310Imported, DJ503_09970Imported, DL545_05970Imported, DMZ30_23005Imported, DNC98_03985Imported, DQF57_14320Imported, DS732_20720Imported, DT034_02910Imported, DXT71_17330Imported, DXT73_08045Imported, E2119_13620Imported, E2129_11295Imported, E2135_07650Imported, E4K60_10615Imported, E5P28_02215Imported, EAI52_12525Imported, EC3234A_48c00940Imported, ECTO6_01063Imported, EEP23_14025Imported, EG808_06245Imported, EI021_14530Imported, EI032_04015Imported, EL75_0909Imported, EL79_0910Imported, EL80_0913Imported, ELY05_07520Imported, EPT01_17030Imported, ERS150873_02008Imported, ETECE1441_01027Imported, ETECE1649_01035Imported, ETECE925_01052Imported, EYD11_05180Imported, EYV18_03360Imported, F1E19_13610Imported, FTV90_23315Imported, FV293_15825Imported, G5632_02955Imported, G9P50_04405Imported, GKF39_10440Imported, GKF74_07820Imported, GKF86_09840Imported, GKF89_09765Imported, GP979_15680Imported, GQE22_17830Imported, GQE33_13170Imported, GQE34_06630Imported, GQE42_09270Imported, GQE64_12535Imported, GRW02_07665Imported, GRW05_12415Imported, GRW81_16040Imported, H4P50_04925Imported, H4P51_04975Imported, HH707_001893Imported, HHH24_001587Imported, HI083_003377Imported, HJR60_002529Imported, HJR92_000194Imported, HJV81_001972Imported, HLU13_17890Imported, HmCms184_04781Imported, HMQ05_14325Imported, HNO03_00485Imported, HNV44_03025Imported, HPE39_20370Imported, HV068_04880Imported, HV109_04900Imported, HVW98_17730Imported, HVX22_04955Imported, HVX24_04710Imported, HVY79_18205Imported, HVY93_04690Imported, HVZ24_04740Imported, HX136_05030Imported, NCTC10865_01356Imported, NCTC11022_02865Imported, NCTC13216_00829Imported, NCTC9045_01215Imported, NCTC9055_03045Imported, NCTC9058_00852Imported, NCTC9706_03291Imported, RK56_023190Imported, RX35_01662Imported, SAMEA3472044_02275Imported, SAMEA3472047_00334Imported, SAMEA3472114_02437Imported, SAMEA3484427_03293Imported, SAMEA3484429_03410Imported, SAMEA3752557_03045Imported, SAMEA3752559_02990Imported, SAMEA3753064_02282Imported, SAMEA3753097_02216Imported, SAMEA3753290_02852Imported, SAMEA3753300_01112Imported, SK85_03029Imported, WP2S18E08_11140Imported, WP7S17E04_09200Imported, WQ89_10145Imported, WR15_06115Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coliImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri562 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini10 – 68TRAMInterPro annotationAdd BLAST59

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

Database of Orthologous Groups

More...
OrthoDBi
1421660at2

Family and domain databases

HAMAP database of protein families

More...
HAMAPi
MF_01010, 23SrRNA_methyltr_RlmD, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR001566, 23S_rRNA_MeTrfase_RlmD
IPR030390, MeTrfase_TrmA_AS
IPR030391, MeTrfase_TrmA_CS
IPR012340, NA-bd_OB-fold
IPR029063, SAM-dependent_MTases
IPR002792, TRAM_dom
IPR010280, U5_MeTrfase_fam

The PANTHER Classification System

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PANTHERi
PTHR11061, PTHR11061, 1 hit

Pfam protein domain database

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Pfami
View protein in Pfam
PF01938, TRAM, 1 hit
PF05958, tRNA_U5-meth_tr, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50249, SSF50249, 1 hit
SSF53335, SSF53335, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51687, SAM_MT_RNA_M5U, 1 hit
PS50926, TRAM, 1 hit
PS01230, TRMA_1, 1 hit
PS01231, TRMA_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A061KTT3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAQFYSAKRR TTTRQIITVS VNDLDSFGQG VARHNGKTLF IPGLLPQENA
60 70 80 90 100
EVTVTEDKKQ YARAKVVRRL SDSPERETPR CPHFGVCGGC QQQHASVDLQ
110 120 130 140 150
QRSKSAALAR LMKHDVSEVI ADVPWGYRRR ARLSLNYLPK TQQLQMGFRK
160 170 180 190 200
AGSSDIVDVK QCPILAPQLE ALLPKVRACL GSLQAMRHLG HVELVQATSG
210 220 230 240 250
TLMILRHTAP LSSADREKLE RFSHSEGLDL YLAPDSEILE TVSGEMPWYD
260 270 280 290 300
SNGLRLTFSP RDFIQVNAGV NQKMVARALE WLDVQPEDRV LDLFCGMGNF
310 320 330 340 350
TLPLATQAAS VVGVEGVPAL VEKGQQNARL NGLQNVTFYH ENLEEDVTKQ
360 370 380 390 400
PWAKNGFDKV LLDPARAGAA GVMQQIIKLE PIRIVYVSCN PATLARDSEA
410 420 430
LLKAGYTIAR LAMLDMFPHT GHLESMVLFS RVK
Length:433
Mass (Da):48,052
Last modified:September 3, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iA46C07B0BD18EAAC
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP017631 Genomic DNA Translation: APT01467.1
CP024141 Genomic DNA Translation: AUJ99907.1
CP020520 Genomic DNA Translation: AVU64692.1
CP029741 Genomic DNA Translation: AWS62455.1
CP031546 Genomic DNA Translation: AXO08580.1
CP031653 Genomic DNA Translation: AXP25652.1
AP021946 Genomic DNA Translation: BBQ61131.1
AP022177 Genomic DNA Translation: BBS76285.1
LR882973 Genomic DNA Translation: CAD5926165.1
LR883012 Genomic DNA Translation: CAD5998791.1
LR883050 Genomic DNA Translation: CAD6005269.1
CYFX01000010 Genomic DNA Translation: CTZ37661.1
AAAARO010000036 Genomic DNA Translation: EAA1812833.1
AAAAVJ010000004 Genomic DNA Translation: EAA2297816.1
AAAFGP010000003 Genomic DNA Translation: EAB6115367.1
AAAFHQ010000003 Genomic DNA Translation: EAB6334401.1
AAAFMF010000006 Genomic DNA Translation: EAB6860933.1
AAAGDZ010000008 Genomic DNA Translation: EAB8956596.1
AAAGXS010000008 Genomic DNA Translation: EAC1389158.1
AAAGZA010000023 Genomic DNA Translation: EAC1526661.1
AAAHAR010000009 Genomic DNA Translation: EAC1627566.1
AAAHBT010000017 Genomic DNA Translation: EAC1716313.1
BHZO01000135 Genomic DNA Translation: GCG10566.1
BFGA01000029 Genomic DNA Translation: GCP03784.1
BFKR01000573 Genomic DNA Translation: GCQ23665.1
BFLW01000162 Genomic DNA Translation: GCU37614.1
BFXY01000144 Genomic DNA Translation: GDH58808.1
BGAI01000070 Genomic DNA Translation: GDJ79408.1
BFZV01000050 Genomic DNA Translation: GDJ82577.1
BGAJ01000003 Genomic DNA Translation: GDJ94539.1
BGBI01000055 Genomic DNA Translation: GDO52503.1
BGEG01000051 Genomic DNA Translation: GDR41638.1
DABAKK010000006 Genomic DNA Translation: HAH1289312.1
DABBRC010000009 Genomic DNA Translation: HAH5437638.1
DABDTK010000027 Genomic DNA Translation: HAI2313534.1
DABEVS010000015 Genomic DNA Translation: HAI5826483.1
DABEWO010000001 Genomic DNA Translation: HAI5970121.1
DABFHD010000015 Genomic DNA Translation: HAI7293338.1
DABHMC010000026 Genomic DNA Translation: HAJ2627024.1
DABGBP010000041 Genomic DNA Translation: HAJ4140797.1
DABIFI010000001 Genomic DNA Translation: HAJ7121232.1
DABIHN010000003 Genomic DNA Translation: HAJ7387864.1
VUDP01000021 Genomic DNA Translation: KAA1330683.1
JPKH01000006 Genomic DNA Translation: KGM71253.1
JPKL01000016 Genomic DNA Translation: KGM83217.1
JPMZ01000005 Genomic DNA Translation: KGM84776.1
LEUM01000018 Genomic DNA Translation: KLX95487.1
LGZN01000018 Genomic DNA Translation: KNF70814.1
LGZP01000017 Genomic DNA Translation: KNF80521.1
LDYI01000161 Genomic DNA Translation: KPO04848.1
LOOZ01000024 Genomic DNA Translation: KXR89037.1
RNLT01000004 Genomic DNA Translation: MGD89209.1
ROIZ01000041 Genomic DNA Translation: MGU40040.1
RNWK01000028 Genomic DNA Translation: MHU15472.1
RNVW01000038 Genomic DNA Translation: MIC25617.1
RUYU01000012 Genomic DNA Translation: MLK52003.1
RYBC01000004 Genomic DNA Translation: MQI86906.1
RYEB01000017 Genomic DNA Translation: MQK92760.1
SQRC01000018 Genomic DNA Translation: MQS20271.1
WKXE01000013 Genomic DNA Translation: MSD74204.1
WKUV01000014 Genomic DNA Translation: MSH47111.1
WKUX01000014 Genomic DNA Translation: MSH95930.1
WKVY01000011 Genomic DNA Translation: MSV05339.1
WSWW01000011 Genomic DNA Translation: MWE66953.1
WSWV01000013 Genomic DNA Translation: MWF09315.1
WSXM01000017 Genomic DNA Translation: MWF49929.1
WSXG01000023 Genomic DNA Translation: MWF73222.1
WSXO01000014 Genomic DNA Translation: MWG15371.1
WTQQ01000235 Genomic DNA Translation: MWR89720.1
WUGD01000015 Genomic DNA Translation: MXF65724.1
WUJA01000006 Genomic DNA Translation: MXI51725.1
WUIY01000053 Genomic DNA Translation: MXI75064.1
JAAJRT010000003 Genomic DNA Translation: NGH36871.1
LCVH01000048 Genomic DNA Translation: OAC43287.1
LZEH01000101 Genomic DNA Translation: OEI65685.1
MSEK01000046 Genomic DNA Translation: OLR88160.1
MTKH01000027 Genomic DNA Translation: ONG31072.1
NAFT01000058 Genomic DNA Translation: ORT01703.1
MUAB01000001 Genomic DNA Translation: OUK55301.1
LYBG01000431 Genomic DNA Translation: OWD73844.1
LEOO01000007 Genomic DNA Translation: OYC71213.1
JWSO02000016 Genomic DNA Translation: PNO94842.1
PUJR01000004 Genomic DNA Translation: PQP12029.1
PYRW01000003 Genomic DNA Translation: PSZ86866.1
CP036177 Genomic DNA Translation: QBF90348.1
CP042645 Genomic DNA Translation: QED81698.1
CP026932 Genomic DNA Translation: QHF74887.1
CP026935 Genomic DNA Translation: QHF77330.1
CP054457 Genomic DNA Translation: QKQ00747.1
CP058571 Genomic DNA Translation: QLG56296.1
CP056794 Genomic DNA Translation: QLY96036.1
CP056865 Genomic DNA Translation: QLZ82194.1
CP057173 Genomic DNA Translation: QME01940.1
CP057250 Genomic DNA Translation: QMF07407.1
CP057281 Genomic DNA Translation: QMF59120.1
CP057717 Genomic DNA Translation: QML91039.1
CP057725 Genomic DNA Translation: QMM00379.1
CP057796 Genomic DNA Translation: QMM68154.1
CP050040 Genomic DNA Translation: QMU41700.1
CP060061 Genomic DNA Translation: QNJ81670.1
CP060057 Genomic DNA Translation: QNJ86640.1
QXNW01000018 Genomic DNA Translation: RHX55757.1
QYZJ01000001 Genomic DNA Translation: RJF19157.1
QYZK01000001 Genomic DNA Translation: RJF33432.1
QZVZ01000013 Genomic DNA Translation: RJX93221.1
QZWA01000015 Genomic DNA Translation: RJY02576.1
RDDG01000026 Genomic DNA Translation: RLX80777.1
SCIR01000030 Genomic DNA Translation: RXB64555.1
UCTY01000013 Genomic DNA Translation: SQJ59216.1
UCWO01000008 Genomic DNA Translation: SQM89481.1
UCYS01000009 Genomic DNA Translation: SQP37196.1
UCZA01000018 Genomic DNA Translation: SQP82776.1
UCZF01000005 Genomic DNA Translation: SQP85736.1
UCZX01000007 Genomic DNA Translation: SQQ82196.1
UCZZ01000012 Genomic DNA Translation: SQR03437.1
UDGC01000017 Genomic DNA Translation: SQY42059.1
UDGL01000018 Genomic DNA Translation: SQZ13283.1
UGCD01000002 Genomic DNA Translation: STI16113.1
UGCG01000003 Genomic DNA Translation: STI34458.1
UGCS01000002 Genomic DNA Translation: STJ01261.1
UGCT01000004 Genomic DNA Translation: STJ04160.1
UGDD01000002 Genomic DNA Translation: STJ53378.1
UGGJ01000004 Genomic DNA Translation: STN86169.1
UINO01000002 Genomic DNA Translation: SVF08784.1
UINP01000015 Genomic DNA Translation: SVF34740.1
LS992166 Genomic DNA Translation: SYX10659.1
SNTW01000012 Genomic DNA Translation: TEV33902.1
SNTQ01000016 Genomic DNA Translation: TEV75121.1
SNTG01000022 Genomic DNA Translation: TEW32050.1
MTXF01000062 Genomic DNA Translation: TEZ53646.1
MTXI01000073 Genomic DNA Translation: TEZ63557.1
MTXJ01000053 Genomic DNA Translation: TEZ68996.1
MTYB01000044 Genomic DNA Translation: TFA60397.1
RZFP01000013 Genomic DNA Translation: TFM33687.1
SRIQ01000011 Genomic DNA Translation: TFZ78074.1
QRFL01000030 Genomic DNA Translation: TGD25202.1
QRFM01000007 Genomic DNA Translation: TGD68406.1
QAFI01000002 Genomic DNA Translation: TGF68297.1
QAFF01000016 Genomic DNA Translation: TGF70656.1
SROQ01000002 Genomic DNA Translation: TGJ31816.1
RRTM01000031 Genomic DNA Translation: TIZ32930.1
VRXD01000021 Genomic DNA Translation: TXQ33246.1
QFTU01000015 Genomic DNA Translation: TYE00433.1
UWVU01000001 Genomic DNA Translation: VCW51748.1
UWXQ01000001 Genomic DNA Translation: VCZ27317.1
CAADJL010000005 Genomic DNA Translation: VFS97636.1

NCBI Reference Sequences

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RefSeqi
WP_000046812.1, NZ_WVVT01000002.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
APT01467; APT01467; BJJ90_05240
AUJ99907; AUJ99907; CR538_05470
AWS62455; AWS62455; AM464_05630
AWV12196; AWV12196; DNQ41_18985
AXO08580; AXO08580; DS732_20720
AXP25652; AXP25652; DL545_05970
CTS74926; CTS74926; ERS085365_02432
CTV91406; CTV91406; ERS139211_02067
CTW24878; CTW24878; ERS085416_02903
CTZ37661; CTZ37661; ERS150873_02008
KGM71253; KGM71253; EL75_0909
KGM83217; KGM83217; EL80_0913
KGM84776; KGM84776; EL79_0910
KLX95487; KLX95487; SK85_03029
KNF70814; KNF70814; WR15_06115
KNF80521; KNF80521; WQ89_10145
KPO04848; KPO04848; ACU57_24390
KXR89037; KXR89037; AUQ13_17560
OAC43287; OAC43287; EC3234A_48c00940
OEI65685; OEI65685; A9R57_06940
OLR88160; OLR88160; BUE81_06950
ONG31072; ONG31072; BW690_04950
ORT01703; ORT01703; BHS87_15760
OTE91498; OTE91498; B1K96_20025
OUK55301; OUK55301; BZL31_00845
OWD73844; OWD73844; A8C65_06240
OYC71213; OYC71213; RX35_01662
PNO94842; PNO94842; RK56_023190
PPI93440; PPI93440; C4J69_11630
PQP12029; PQP12029; C5N07_06180
PSZ86866; PSZ86866; C9E25_03300
QBF90348; QBF90348; EYD11_05180
SPW88782; SPW88782; NCTC13462_04802
SQJ59216; SQJ59216; SAMEA3472044_02275
SQM89481; SQM89481; SAMEA3472114_02437
SQP37196; SQP37196; SAMEA3753290_02852
SQP82776; SQP82776; SAMEA3752557_03045
SQP85736; SQP85736; SAMEA3753300_01112
SQQ82196; SQQ82196; SAMEA3753064_02282
SQR03437; SQR03437; SAMEA3753097_02216
SQY42059; SQY42059; SAMEA3484427_03293
SQZ13283; SQZ13283; SAMEA3484429_03410
STD54965; STD54965; NCTC9037_01238
STI16113; STI16113; NCTC10865_01356
STI34458; STI34458; NCTC11022_02865
STJ01261; STJ01261; NCTC9055_03045
STJ04160; STJ04160; NCTC9058_00852
STJ53378; STJ53378; NCTC9045_01215
STN86169; STN86169; NCTC9706_03291
SVF08784; SVF08784; SAMEA3472047_00334
SVF34740; SVF34740; SAMEA3752559_02990
SYX10659; SYX10659; ECTO6_01063

Database of genes from NCBI RefSeq genomes

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GeneIDi
57730411

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|562.10493.peg.3837

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP017631 Genomic DNA Translation: APT01467.1
CP024141 Genomic DNA Translation: AUJ99907.1
CP020520 Genomic DNA Translation: AVU64692.1
CP029741 Genomic DNA Translation: AWS62455.1
CP031546 Genomic DNA Translation: AXO08580.1
CP031653 Genomic DNA Translation: AXP25652.1
AP021946 Genomic DNA Translation: BBQ61131.1
AP022177 Genomic DNA Translation: BBS76285.1
LR882973 Genomic DNA Translation: CAD5926165.1
LR883012 Genomic DNA Translation: CAD5998791.1
LR883050 Genomic DNA Translation: CAD6005269.1
CYFX01000010 Genomic DNA Translation: CTZ37661.1
AAAARO010000036 Genomic DNA Translation: EAA1812833.1
AAAAVJ010000004 Genomic DNA Translation: EAA2297816.1
AAAFGP010000003 Genomic DNA Translation: EAB6115367.1
AAAFHQ010000003 Genomic DNA Translation: EAB6334401.1
AAAFMF010000006 Genomic DNA Translation: EAB6860933.1
AAAGDZ010000008 Genomic DNA Translation: EAB8956596.1
AAAGXS010000008 Genomic DNA Translation: EAC1389158.1
AAAGZA010000023 Genomic DNA Translation: EAC1526661.1
AAAHAR010000009 Genomic DNA Translation: EAC1627566.1
AAAHBT010000017 Genomic DNA Translation: EAC1716313.1
BHZO01000135 Genomic DNA Translation: GCG10566.1
BFGA01000029 Genomic DNA Translation: GCP03784.1
BFKR01000573 Genomic DNA Translation: GCQ23665.1
BFLW01000162 Genomic DNA Translation: GCU37614.1
BFXY01000144 Genomic DNA Translation: GDH58808.1
BGAI01000070 Genomic DNA Translation: GDJ79408.1
BFZV01000050 Genomic DNA Translation: GDJ82577.1
BGAJ01000003 Genomic DNA Translation: GDJ94539.1
BGBI01000055 Genomic DNA Translation: GDO52503.1
BGEG01000051 Genomic DNA Translation: GDR41638.1
DABAKK010000006 Genomic DNA Translation: HAH1289312.1
DABBRC010000009 Genomic DNA Translation: HAH5437638.1
DABDTK010000027 Genomic DNA Translation: HAI2313534.1
DABEVS010000015 Genomic DNA Translation: HAI5826483.1
DABEWO010000001 Genomic DNA Translation: HAI5970121.1
DABFHD010000015 Genomic DNA Translation: HAI7293338.1
DABHMC010000026 Genomic DNA Translation: HAJ2627024.1
DABGBP010000041 Genomic DNA Translation: HAJ4140797.1
DABIFI010000001 Genomic DNA Translation: HAJ7121232.1
DABIHN010000003 Genomic DNA Translation: HAJ7387864.1
VUDP01000021 Genomic DNA Translation: KAA1330683.1
JPKH01000006 Genomic DNA Translation: KGM71253.1
JPKL01000016 Genomic DNA Translation: KGM83217.1
JPMZ01000005 Genomic DNA Translation: KGM84776.1
LEUM01000018 Genomic DNA Translation: KLX95487.1
LGZN01000018 Genomic DNA Translation: KNF70814.1
LGZP01000017 Genomic DNA Translation: KNF80521.1
LDYI01000161 Genomic DNA Translation: KPO04848.1
LOOZ01000024 Genomic DNA Translation: KXR89037.1
RNLT01000004 Genomic DNA Translation: MGD89209.1
ROIZ01000041 Genomic DNA Translation: MGU40040.1
RNWK01000028 Genomic DNA Translation: MHU15472.1
RNVW01000038 Genomic DNA Translation: MIC25617.1
RUYU01000012 Genomic DNA Translation: MLK52003.1
RYBC01000004 Genomic DNA Translation: MQI86906.1
RYEB01000017 Genomic DNA Translation: MQK92760.1
SQRC01000018 Genomic DNA Translation: MQS20271.1
WKXE01000013 Genomic DNA Translation: MSD74204.1
WKUV01000014 Genomic DNA Translation: MSH47111.1
WKUX01000014 Genomic DNA Translation: MSH95930.1
WKVY01000011 Genomic DNA Translation: MSV05339.1
WSWW01000011 Genomic DNA Translation: MWE66953.1
WSWV01000013 Genomic DNA Translation: MWF09315.1
WSXM01000017 Genomic DNA Translation: MWF49929.1
WSXG01000023 Genomic DNA Translation: MWF73222.1
WSXO01000014 Genomic DNA Translation: MWG15371.1
WTQQ01000235 Genomic DNA Translation: MWR89720.1
WUGD01000015 Genomic DNA Translation: MXF65724.1
WUJA01000006 Genomic DNA Translation: MXI51725.1
WUIY01000053 Genomic DNA Translation: MXI75064.1
JAAJRT010000003 Genomic DNA Translation: NGH36871.1
LCVH01000048 Genomic DNA Translation: OAC43287.1
LZEH01000101 Genomic DNA Translation: OEI65685.1
MSEK01000046 Genomic DNA Translation: OLR88160.1
MTKH01000027 Genomic DNA Translation: ONG31072.1
NAFT01000058 Genomic DNA Translation: ORT01703.1
MUAB01000001 Genomic DNA Translation: OUK55301.1
LYBG01000431 Genomic DNA Translation: OWD73844.1
LEOO01000007 Genomic DNA Translation: OYC71213.1
JWSO02000016 Genomic DNA Translation: PNO94842.1
PUJR01000004 Genomic DNA Translation: PQP12029.1
PYRW01000003 Genomic DNA Translation: PSZ86866.1
CP036177 Genomic DNA Translation: QBF90348.1
CP042645 Genomic DNA Translation: QED81698.1
CP026932 Genomic DNA Translation: QHF74887.1
CP026935 Genomic DNA Translation: QHF77330.1
CP054457 Genomic DNA Translation: QKQ00747.1
CP058571 Genomic DNA Translation: QLG56296.1
CP056794 Genomic DNA Translation: QLY96036.1
CP056865 Genomic DNA Translation: QLZ82194.1
CP057173 Genomic DNA Translation: QME01940.1
CP057250 Genomic DNA Translation: QMF07407.1
CP057281 Genomic DNA Translation: QMF59120.1
CP057717 Genomic DNA Translation: QML91039.1
CP057725 Genomic DNA Translation: QMM00379.1
CP057796 Genomic DNA Translation: QMM68154.1
CP050040 Genomic DNA Translation: QMU41700.1
CP060061 Genomic DNA Translation: QNJ81670.1
CP060057 Genomic DNA Translation: QNJ86640.1
QXNW01000018 Genomic DNA Translation: RHX55757.1
QYZJ01000001 Genomic DNA Translation: RJF19157.1
QYZK01000001 Genomic DNA Translation: RJF33432.1
QZVZ01000013 Genomic DNA Translation: RJX93221.1
QZWA01000015 Genomic DNA Translation: RJY02576.1
RDDG01000026 Genomic DNA Translation: RLX80777.1
SCIR01000030 Genomic DNA Translation: RXB64555.1
UCTY01000013 Genomic DNA Translation: SQJ59216.1
UCWO01000008 Genomic DNA Translation: SQM89481.1
UCYS01000009 Genomic DNA Translation: SQP37196.1
UCZA01000018 Genomic DNA Translation: SQP82776.1
UCZF01000005 Genomic DNA Translation: SQP85736.1
UCZX01000007 Genomic DNA Translation: SQQ82196.1
UCZZ01000012 Genomic DNA Translation: SQR03437.1
UDGC01000017 Genomic DNA Translation: SQY42059.1
UDGL01000018 Genomic DNA Translation: SQZ13283.1
UGCD01000002 Genomic DNA Translation: STI16113.1
UGCG01000003 Genomic DNA Translation: STI34458.1
UGCS01000002 Genomic DNA Translation: STJ01261.1
UGCT01000004 Genomic DNA Translation: STJ04160.1
UGDD01000002 Genomic DNA Translation: STJ53378.1
UGGJ01000004 Genomic DNA Translation: STN86169.1
UINO01000002 Genomic DNA Translation: SVF08784.1
UINP01000015 Genomic DNA Translation: SVF34740.1
LS992166 Genomic DNA Translation: SYX10659.1
SNTW01000012 Genomic DNA Translation: TEV33902.1
SNTQ01000016 Genomic DNA Translation: TEV75121.1
SNTG01000022 Genomic DNA Translation: TEW32050.1
MTXF01000062 Genomic DNA Translation: TEZ53646.1
MTXI01000073 Genomic DNA Translation: TEZ63557.1
MTXJ01000053 Genomic DNA Translation: TEZ68996.1
MTYB01000044 Genomic DNA Translation: TFA60397.1
RZFP01000013 Genomic DNA Translation: TFM33687.1
SRIQ01000011 Genomic DNA Translation: TFZ78074.1
QRFL01000030 Genomic DNA Translation: TGD25202.1
QRFM01000007 Genomic DNA Translation: TGD68406.1
QAFI01000002 Genomic DNA Translation: TGF68297.1
QAFF01000016 Genomic DNA Translation: TGF70656.1
SROQ01000002 Genomic DNA Translation: TGJ31816.1
RRTM01000031 Genomic DNA Translation: TIZ32930.1
VRXD01000021 Genomic DNA Translation: TXQ33246.1
QFTU01000015 Genomic DNA Translation: TYE00433.1
UWVU01000001 Genomic DNA Translation: VCW51748.1
UWXQ01000001 Genomic DNA Translation: VCZ27317.1
CAADJL010000005 Genomic DNA Translation: VFS97636.1
RefSeqiWP_000046812.1, NZ_WVVT01000002.1

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiAPT01467; APT01467; BJJ90_05240
AUJ99907; AUJ99907; CR538_05470
AWS62455; AWS62455; AM464_05630
AWV12196; AWV12196; DNQ41_18985
AXO08580; AXO08580; DS732_20720
AXP25652; AXP25652; DL545_05970
CTS74926; CTS74926; ERS085365_02432
CTV91406; CTV91406; ERS139211_02067
CTW24878; CTW24878; ERS085416_02903
CTZ37661; CTZ37661; ERS150873_02008
KGM71253; KGM71253; EL75_0909
KGM83217; KGM83217; EL80_0913
KGM84776; KGM84776; EL79_0910
KLX95487; KLX95487; SK85_03029
KNF70814; KNF70814; WR15_06115
KNF80521; KNF80521; WQ89_10145
KPO04848; KPO04848; ACU57_24390
KXR89037; KXR89037; AUQ13_17560
OAC43287; OAC43287; EC3234A_48c00940
OEI65685; OEI65685; A9R57_06940
OLR88160; OLR88160; BUE81_06950
ONG31072; ONG31072; BW690_04950
ORT01703; ORT01703; BHS87_15760
OTE91498; OTE91498; B1K96_20025
OUK55301; OUK55301; BZL31_00845
OWD73844; OWD73844; A8C65_06240
OYC71213; OYC71213; RX35_01662
PNO94842; PNO94842; RK56_023190
PPI93440; PPI93440; C4J69_11630
PQP12029; PQP12029; C5N07_06180
PSZ86866; PSZ86866; C9E25_03300
QBF90348; QBF90348; EYD11_05180
SPW88782; SPW88782; NCTC13462_04802
SQJ59216; SQJ59216; SAMEA3472044_02275
SQM89481; SQM89481; SAMEA3472114_02437
SQP37196; SQP37196; SAMEA3753290_02852
SQP82776; SQP82776; SAMEA3752557_03045
SQP85736; SQP85736; SAMEA3753300_01112
SQQ82196; SQQ82196; SAMEA3753064_02282
SQR03437; SQR03437; SAMEA3753097_02216
SQY42059; SQY42059; SAMEA3484427_03293
SQZ13283; SQZ13283; SAMEA3484429_03410
STD54965; STD54965; NCTC9037_01238
STI16113; STI16113; NCTC10865_01356
STI34458; STI34458; NCTC11022_02865
STJ01261; STJ01261; NCTC9055_03045
STJ04160; STJ04160; NCTC9058_00852
STJ53378; STJ53378; NCTC9045_01215
STN86169; STN86169; NCTC9706_03291
SVF08784; SVF08784; SAMEA3472047_00334
SVF34740; SVF34740; SAMEA3752559_02990
SYX10659; SYX10659; ECTO6_01063
GeneIDi57730411
PATRICifig|562.10493.peg.3837

Phylogenomic databases

OrthoDBi1421660at2

Family and domain databases

HAMAPiMF_01010, 23SrRNA_methyltr_RlmD, 1 hit
InterProiView protein in InterPro
IPR001566, 23S_rRNA_MeTrfase_RlmD
IPR030390, MeTrfase_TrmA_AS
IPR030391, MeTrfase_TrmA_CS
IPR012340, NA-bd_OB-fold
IPR029063, SAM-dependent_MTases
IPR002792, TRAM_dom
IPR010280, U5_MeTrfase_fam
PANTHERiPTHR11061, PTHR11061, 1 hit
PfamiView protein in Pfam
PF01938, TRAM, 1 hit
PF05958, tRNA_U5-meth_tr, 1 hit
SUPFAMiSSF50249, SSF50249, 1 hit
SSF53335, SSF53335, 1 hit
PROSITEiView protein in PROSITE
PS51687, SAM_MT_RNA_M5U, 1 hit
PS50926, TRAM, 1 hit
PS01230, TRMA_1, 1 hit
PS01231, TRMA_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A061KTT3_ECOLX
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A061KTT3
Secondary accession number(s): A0A2A2XEH0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 3, 2014
Last sequence update: September 3, 2014
Last modified: April 7, 2021
This is version 68 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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