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Entry version 37 (11 Dec 2019)
Sequence version 1 (03 Sep 2014)
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Protein
Submitted name:

RNI-like superfamily protein

Gene

TCM_021580

Organism
Theobroma cacao (Cacao) (Cocoa)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-bindingSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
RNI-like superfamily proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:TCM_021580Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiTheobroma cacao (Cacao) (Cocoa)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3641 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsMalvalesMalvaceaeByttnerioideaeTheobroma
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000026915 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
A0A061EXQ1 baseline

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3641.EOY07049

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini910 – 967WRKYInterPro annotationAdd BLAST58
Domaini1066 – 1131WRKYInterPro annotationAdd BLAST66

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni789 – 828DisorderedSequence analysisAdd BLAST40
Regioni872 – 931DisorderedSequence analysisAdd BLAST60
Regioni958 – 1050DisorderedSequence analysisAdd BLAST93
Regioni1126 – 1183DisorderedSequence analysisAdd BLAST58

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi872 – 907PolarSequence analysisAdd BLAST36
Compositional biasi963 – 1004PolarSequence analysisAdd BLAST42
Compositional biasi1029 – 1043PolyampholyteSequence analysisAdd BLAST15
Compositional biasi1139 – 1183PolarSequence analysisAdd BLAST45

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.20.25.80, 2 hits
3.80.10.10, 3 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR001611 Leu-rich_rpt
IPR006553 Leu-rich_rpt_Cys-con_subtyp
IPR032675 LRR_dom_sf
IPR003657 WRKY_dom
IPR036576 WRKY_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF13516 LRR_6, 4 hits
PF03106 WRKY, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00367 LRR_CC, 16 hits
SM00774 WRKY, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF118290 SSF118290, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50811 WRKY, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A061EXQ1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKKQKKECFG GFNPFDLLSE EIIFMILDLL HRNPLDKKSF SLVCKSFYAT
60 70 80 90 100
ESNHRRTLKP LRQEHLPAIL CRYSNITHLD LTLCSRVTDA SLSIISNACT
110 120 130 140 150
STLRSVDFSR SRLFSTSGLL GLALNCKNLV EIDLSNGTDL KDSAMAAVAE
160 170 180 190 200
AKNLEKLWLA RCKSITDLGV GCVAVGCRKL RFVCLKWCLG VGDLGVGLIA
210 220 230 240 250
VKCKQILYLD LSYLPITNKC LSSVLKLQHL EDLVMEGCFG IDDDSLAVLK
260 270 280 290 300
HGCKSLKSLD VSTCQNITDS GLSSLISGAE GLQQLTLAHG SPVTSSLADC
310 320 330 340 350
LKKLSLLQSV KLDGCLITYD GLKTIGNWCL SLRELSLSKC LGVTDEGLSS
360 370 380 390 400
VVTKHKDLRK LDITCCRKIT DVSVAHITNS CNFLSSLRME SCTLVSRKAF
410 420 430 440 450
GLIGQQCHLL EELDLTDNEI DDEGLKSISR CSKLSNLKLG ICLNITDEGL
460 470 480 490 500
IHIGRGCSKL IELDLYRCAE ITDLGILAIA QGCPGLEMIN IAYCKDITDR
510 520 530 540 550
SLLSLSKCSC LKTFESRGCS RITSLGLTAI AVGCKELSKL DIKKCHNIDD
560 570 580 590 600
AGMLPLAHFS QNLRQINLSH SSVTDVGLLS LASISCLQNI TILHLKGLTP
610 620 630 640 650
SGLAAALLAC AGLRKVKLQA AFRWLLPHRL FEHLEARGCG IRSQVLEITV
660 670 680 690 700
GRSNAIEILE DLVGTNTSNT SSINSQTAFP FSNSNPMAAS SSFMNMDNIN
710 720 730 740 750
QNRSTSITSW GLSGHQVTDK FGIEIPKFKS LAPSSLPISP APVSPSSYLV
760 770 780 790 800
TPPAAFSPTD FLDSPVLFST SSIFPSPTTG AFAGQTLNWR SNSNDNQQGI
810 820 830 840 850
KGEHNNFFDF SFQPQPGPSS TSSSTFQSSS NIVSVEQSTW NFSEPMKQPE
860 870 880 890 900
LPVEKAARVK SEFAPMQNFS SEMAPSQTTM QQSNTGSQPA GYNQYNQSTQ
910 920 930 940 950
YTRENRKVQD GYNWRKYGQK QVKGSENPRS YYKCTYPNCP TKKKVERSLD
960 970 980 990 1000
GQITEIVYKG SHNHPKPQST RRSSSHAACT NSEISDQSGG TLGNEQTDSF
1010 1020 1030 1040 1050
LVHEDTSGSI GEDEFDQASP LSNPGGDDNE NEPDAKRWKG ENENEGIIGS
1060 1070 1080 1090 1100
GSRTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI
1110 1120 1130 1140 1150
GCPVRKHVER ASHDLRAVIT TYEGKHNHDV PAARGSGYAI NRPSTTNNSN
1160 1170 1180 1190 1200
APMPIRPSAV PSQASNTSYP NSLQTRLPTS GSQPPVTLEM LQNQGSYGFS
1210 1220 1230
GFGKPIGSYM SQAQFSEGAF ARAKDEPEDD SFFDGFLS
Length:1,238
Mass (Da):135,151
Last modified:September 3, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i20065EF3FF083D98
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CM001883 Genomic DNA Translation: EOY07049.1

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM001883 Genomic DNA Translation: EOY07049.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi3641.EOY07049

Gene expression databases

ExpressionAtlasiA0A061EXQ1 baseline

Family and domain databases

Gene3Di2.20.25.80, 2 hits
3.80.10.10, 3 hits
InterProiView protein in InterPro
IPR001611 Leu-rich_rpt
IPR006553 Leu-rich_rpt_Cys-con_subtyp
IPR032675 LRR_dom_sf
IPR003657 WRKY_dom
IPR036576 WRKY_dom_sf
PfamiView protein in Pfam
PF13516 LRR_6, 4 hits
PF03106 WRKY, 2 hits
SMARTiView protein in SMART
SM00367 LRR_CC, 16 hits
SM00774 WRKY, 2 hits
SUPFAMiSSF118290 SSF118290, 2 hits
PROSITEiView protein in PROSITE
PS50811 WRKY, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A061EXQ1_THECC
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A061EXQ1
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 3, 2014
Last sequence update: September 3, 2014
Last modified: December 11, 2019
This is version 37 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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Main funding by: National Institutes of Health

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