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Entry version 17 (12 Aug 2020)
Sequence version 1 (09 Jul 2014)
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Protein
Submitted name:

Indolepyruvate ferredoxin oxidoreductase

Gene

HOC_09749

Organism
Hyphomonas oceanitis SCH89
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionOxidoreductaseImportedARBA annotation
LigandPyruvateImported

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Indolepyruvate ferredoxin oxidoreductaseImported (EC:1.2.7.8Imported)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:HOC_09749Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHyphomonas oceanitis SCH89Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1280953 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesHyphomonadaceaeHyphomonas
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000024942 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
1280953.HOC_09749

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini625 – 6574Fe-4S ferredoxin-typeInterPro annotationAdd BLAST33

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.ARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG1014, Bacteria
COG4231, Bacteria

Database of Orthologous Groups

More...
OrthoDBi
37279at2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.40.920.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR017896, 4Fe4S_Fe-S-bd
IPR019752, Pyrv/ketoisovalerate_OxRed_cat
IPR002869, Pyrv_flavodox_OxRed_cen
IPR029061, THDP-binding
IPR011766, TPP_enzyme-bd_C

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01558, POR, 1 hit
PF02775, TPP_enzyme_C, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52518, SSF52518, 2 hits
SSF53323, SSF53323, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51379, 4FE4S_FER_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A059G703-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKHREVTLDD KYELVEGNAF MTGIQALVRL PLDRKRLDIG SGHNTAGFIS
60 70 80 90 100
GYRGSPLGGY DQQLRAVQPL LDSHNIQFWE GLNEDLGATA VWGSQQLGLF
110 120 130 140 150
PGARYDGLFG IWYGKAPGVD RTGDVFKHAN AAGTSALGGV LAIIGDDHNC
160 170 180 190 200
KSSTLPSQSE FAMADAEIPV LNPASIQDVL DYGIHGWNMS RFSGAWTGLV
210 220 230 240 250
ALADTMDSGS VVNVSLDRFA FAEPGFHMPE AGVHMRRGDT PLDKEARLRH
260 270 280 290 300
FKLPAAQAYV RANRLDHVVI PSPKPRIGVI VTGQAARDVF EALAAIGLSP
310 320 330 340 350
EEAGRLGLTV YKVAMPWPLE PEGVREFCAG LERVVVIEHK RPLIEEQLKA
360 370 380 390 400
ALYDLPDSQR PRIEGKRAAN GEPLLSDVAS ISIPEMAHAL MKIIPAGWDT
410 420 430 440 450
ARADAYFDRV GRAGEAARGN ASETVRSPHF CSGCPHNTST TVPEGSRALA
460 470 480 490 500
GIGCHYMANF MPDRKTDMTS QMGGEGIAWV GQHWATDEDH VFVNLGDGTY
510 520 530 540 550
SHSGSLAIRA AVTSGAKMTY KILYNDAVAM TGGQHVESGQ TPAQIAQQVE
560 570 580 590 600
AEGVKTIVIV TEDPTRYAGV KNLPRSVKIF DREDLEDVQV MLRATPGVSV
610 620 630 640 650
MIYDQMCATE KRRRSKRGII APDRVRVIIN TEVCEGCGDC SIKSNCLSVE
660 670 680 690 700
PVETELGRKR RINQSSCNTD LSCLTGFCPS FVTVKDGEPA WTGEVRREFD
710 720 730 740 750
ASNLPLPETP SLAAPWNVLF TGVGGTGVTT VAAVLAMAAH VDGNAASSLD
760 770 780 790 800
MTGLAQKGGP VLSHIRFARE PEDISTGRVP PASADLIIAC DLVVAAGGDA
810 820 830 840 850
LLLMDPTRTA AYANSDVTPT SEFIRNRSKR FESDLLAGRV KRQARDFGAF
860 870 880 890 900
DAEALAVGYL HDAIYTNMIM VGYSWQKGAV PVSLRGLYRA IRLNGTKVDD
910 920 930 940 950
NMAAFNIGRI AAAAPERLAQ QHDPRGHLEP KTLDELIDDR AKRLTAYQNA
960 970 980 990 1000
AYAQAYRDAV TRVRSAEEAA GLGDKLTRAA ATYAYKLMAY KDEYEVARLY
1010 1020 1030 1040 1050
TDGSFAAQLA SQFKGGKLRF WLAPPIMSKK DSHGHLKKKH FGGWMMLGFK
1060 1070 1080 1090 1100
LLTKLKGLRE TPFDLFGRTE ERKMERALRD TYLETLETLA SGLTVKNHAV
1110 1120 1130 1140 1150
AVAIAEVPDE IRGYGHVKEA AVAVASETEA ALWKGWPTGD MPKAKTTLIA

AE
Length:1,152
Mass (Da):124,919
Last modified:July 9, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD349B19088B7AEC7
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
ARYL01000013 Genomic DNA Translation: KDA02494.1

NCBI Reference Sequences

More...
RefSeqi
WP_035537993.1, NZ_ARYL01000013.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
KDA02494; KDA02494; HOC_09749

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|1280953.3.peg.1968

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ARYL01000013 Genomic DNA Translation: KDA02494.1
RefSeqiWP_035537993.1, NZ_ARYL01000013.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi1280953.HOC_09749

Genome annotation databases

EnsemblBacteriaiKDA02494; KDA02494; HOC_09749
PATRICifig|1280953.3.peg.1968

Phylogenomic databases

eggNOGiCOG1014, Bacteria
COG4231, Bacteria
OrthoDBi37279at2

Family and domain databases

Gene3Di3.40.920.10, 1 hit
InterProiView protein in InterPro
IPR017896, 4Fe4S_Fe-S-bd
IPR019752, Pyrv/ketoisovalerate_OxRed_cat
IPR002869, Pyrv_flavodox_OxRed_cen
IPR029061, THDP-binding
IPR011766, TPP_enzyme-bd_C
PfamiView protein in Pfam
PF01558, POR, 1 hit
PF02775, TPP_enzyme_C, 1 hit
SUPFAMiSSF52518, SSF52518, 2 hits
SSF53323, SSF53323, 1 hit
PROSITEiView protein in PROSITE
PS51379, 4FE4S_FER_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A059G703_9RHOB
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A059G703
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 9, 2014
Last sequence update: July 9, 2014
Last modified: August 12, 2020
This is version 17 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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