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Protein
Submitted name:

Protein rtcB

Gene

rtcB

Organism
Escherichia coli
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionLigaseImported

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Protein rtcBImported (EC:6.5.1.-Imported)
Submitted name:
RNA ligaseImported
Submitted name:
RNA-splicing ligaseImported
Submitted name:
RNA-splicing ligase RtcBImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rtcBImported
Synonyms:rtcB_1Imported, rtcB_2Imported
ORF Names:AM266_07580Imported, AM464_09790Imported, APT13_10025Imported, AUQ13_09145Imported, BHS87_19190Imported, BK400_00475Imported, BUE81_05850Imported, BVL39_08980Imported, BW690_17685Imported, C4J69_02735Imported, C5N07_12295Imported, C6669_10865Imported, C7235_02080Imported, CA593_09100Imported, DNQ41_23010Imported, DTL43_14195Imported, DTL84_15080Imported, EC3234A_57c00810Imported, ERS085365_00903Imported, ERS085416_02808Imported, ERS139211_00113Imported, ERS150873_03611Imported, NCTC11181_02634Imported, NCTC13462_03978Imported, NCTC9010_00379Imported, NCTC9037_00545Imported, NCTC9045_00427Imported, NCTC9060_03066Imported, NCTC9062_02809Imported, NCTC9110_00328Imported, NCTC9962_06600Imported, PGD_00464Imported, RK56_020770Imported, SAMEA3472044_01042Imported, SAMEA3472047_04035Imported, SAMEA3472067_03411Imported, SAMEA3472080_02944Imported, SAMEA3484427_00081Imported, SAMEA3484429_02852Imported, SAMEA3484433_03570Imported, SAMEA3485103_02133Imported, SAMEA3753070_02100Imported, SAMEA3753097_01449Imported, SAMEA3753106_01860Imported, SAMEA3753300_02346Imported, SK85_03735Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coliImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri562 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG4105E0Y Bacteria
COG1690 LUCA

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.90.1860.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR001233 RtcB
IPR036025 RtcB-like_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01139 RtcB, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF103365 SSF103365, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS01288 UPF0027, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A024L005-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNYELLTTEN APVKMWTKGV PVEADARQQL INTAKMPFIF KHIAVMPDVH
60 70 80 90 100
LGKGSTIGSV IPTKGAIIPA AVGVDIGCGM NALRTALTAE DLPENLAELR
110 120 130 140 150
QAIETAVPHG RTTGRCKRDK GAWENPPVNV DAKWAELEAG YQWLTQKYPR
160 170 180 190 200
FLNTNNYKHL GTLGTGNHFI EICLDESDQV WIMLHSGSRG IGNAIGTYFI
210 220 230 240 250
DLAQKEMQET LETLPSRDLA YFMEGTEYFD DYLKAVAWAQ LFASLNRDAM
260 270 280 290 300
MENVVTALQS ITQKTVRQPQ TLAMEEINCH HNYVQKEQHF GEEIYVTRKG
310 320 330 340 350
AVSARAGQYG IIPGSMGAKS FIVRGLGNEE SFCSCSHGAG RVMSRTKAKK
360 370 380 390 400
LFSVEDQIRA TAHVECRKDA EVIDEIPMAY KDIDAVMAAQ SDLVEVIYTL

RQVVCVKG
Length:408
Mass (Da):45,222
Last modified:July 9, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC0C33BA04542185F
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP021175 Genomic DNA Translation: ARR33248.1
CP019051 Genomic DNA Translation: AUL68273.1
CP029242 Genomic DNA Translation: AWJ97552.1
CP029741 Genomic DNA Translation: AWS63171.1
CP029973 Genomic DNA Translation: AWV12901.1
CP031134 Genomic DNA Translation: AXG17477.1
HG976950 Genomic DNA Translation: CDU37429.1
CYAQ01000005 Genomic DNA Translation: CTS07572.1
CYDH01000001 Genomic DNA Translation: CTU93236.1
CYCX01000021 Genomic DNA Translation: CTW20344.1
CYFX01000028 Genomic DNA Translation: CTZ66799.1
LEUM01000020 Genomic DNA Translation: KLX94354.1
LIVE01000009 Genomic DNA Translation: KQJ17118.1
LOOZ01000013 Genomic DNA Translation: KXR91731.1
LCVH01000057 Genomic DNA Translation: OAC42339.1
MOKZ01000001 Genomic DNA Translation: OJS91507.1
MSEK01000039 Genomic DNA Translation: OLR88406.1
MTKH01000147 Genomic DNA Translation: ONG27117.1
NAFT01000070 Genomic DNA Translation: ORS99912.1
JWSO02000014 Genomic DNA Translation: PNO96392.1
PSSV01000003 Genomic DNA Translation: PPI96788.1
PUJR01000010 Genomic DNA Translation: PQP10159.1
QOWX01000009 Genomic DNA Translation: RCR58851.1
QOGZ01000014 Genomic DNA Translation: RDA38083.1
QOHC01000017 Genomic DNA Translation: RDA47816.1
UARY01000011 Genomic DNA Translation: SPW87974.1
UCTY01000005 Genomic DNA Translation: SQJ56089.1
UCUN01000011 Genomic DNA Translation: SQK31100.1
UCZF01000010 Genomic DNA Translation: SQP88092.1
UCZZ01000007 Genomic DNA Translation: SQR01879.1
UDAQ01000011 Genomic DNA Translation: SQR65336.1
UDGC01000001 Genomic DNA Translation: SQY32106.1
UDGL01000014 Genomic DNA Translation: SQZ12403.1
UEJS01000003 Genomic DNA Translation: SRY06242.1
UFYN01000002 Genomic DNA Translation: STD41970.1
UFYM01000003 Genomic DNA Translation: STD53652.1
UGBV01000003 Genomic DNA Translation: STH77528.1
UGCZ01000001 Genomic DNA Translation: STJ37366.1
UGDD01000002 Genomic DNA Translation: STJ52625.1
UGDF01000003 Genomic DNA Translation: STJ63516.1
UGDG01000002 Genomic DNA Translation: STJ71072.1
UGED01000019 Genomic DNA Translation: STM17383.1
UINI01000017 Genomic DNA Translation: SVF27114.1
UINO01000065 Genomic DNA Translation: SVF46384.1
UINY01000006 Genomic DNA Translation: SVF85166.1
UINX01000012 Genomic DNA Translation: SVF95407.1

NCBI Reference Sequences

More...
RefSeqi
WP_001105504.1, NZ_UIKP01000006.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ANM84180; ANM84180; A8V37_17380
AOT30863; AOT30863; FORC31_0394
CDU37429; CDU37429; PGD_00464
CTS07572; CTS07572; ERS085365_00903
CTU93236; CTU93236; ERS139211_00113
CTW20344; CTW20344; ERS085416_02808
CTX83969; CTX83969; ERS139235_03625
CTZ66799; CTZ66799; ERS150873_03611
KLX94354; KLX94354; SK85_03735
KQJ17118; KQJ17118; AM266_07580
KXQ42237; KXQ42237; AUQ01_02585
OAC42339; OAC42339; EC3234A_57c00810
ODH31075; ODH31075; A6803_08575

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|562.10472.peg.3022

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP021175 Genomic DNA Translation: ARR33248.1
CP019051 Genomic DNA Translation: AUL68273.1
CP029242 Genomic DNA Translation: AWJ97552.1
CP029741 Genomic DNA Translation: AWS63171.1
CP029973 Genomic DNA Translation: AWV12901.1
CP031134 Genomic DNA Translation: AXG17477.1
HG976950 Genomic DNA Translation: CDU37429.1
CYAQ01000005 Genomic DNA Translation: CTS07572.1
CYDH01000001 Genomic DNA Translation: CTU93236.1
CYCX01000021 Genomic DNA Translation: CTW20344.1
CYFX01000028 Genomic DNA Translation: CTZ66799.1
LEUM01000020 Genomic DNA Translation: KLX94354.1
LIVE01000009 Genomic DNA Translation: KQJ17118.1
LOOZ01000013 Genomic DNA Translation: KXR91731.1
LCVH01000057 Genomic DNA Translation: OAC42339.1
MOKZ01000001 Genomic DNA Translation: OJS91507.1
MSEK01000039 Genomic DNA Translation: OLR88406.1
MTKH01000147 Genomic DNA Translation: ONG27117.1
NAFT01000070 Genomic DNA Translation: ORS99912.1
JWSO02000014 Genomic DNA Translation: PNO96392.1
PSSV01000003 Genomic DNA Translation: PPI96788.1
PUJR01000010 Genomic DNA Translation: PQP10159.1
QOWX01000009 Genomic DNA Translation: RCR58851.1
QOGZ01000014 Genomic DNA Translation: RDA38083.1
QOHC01000017 Genomic DNA Translation: RDA47816.1
UARY01000011 Genomic DNA Translation: SPW87974.1
UCTY01000005 Genomic DNA Translation: SQJ56089.1
UCUN01000011 Genomic DNA Translation: SQK31100.1
UCZF01000010 Genomic DNA Translation: SQP88092.1
UCZZ01000007 Genomic DNA Translation: SQR01879.1
UDAQ01000011 Genomic DNA Translation: SQR65336.1
UDGC01000001 Genomic DNA Translation: SQY32106.1
UDGL01000014 Genomic DNA Translation: SQZ12403.1
UEJS01000003 Genomic DNA Translation: SRY06242.1
UFYN01000002 Genomic DNA Translation: STD41970.1
UFYM01000003 Genomic DNA Translation: STD53652.1
UGBV01000003 Genomic DNA Translation: STH77528.1
UGCZ01000001 Genomic DNA Translation: STJ37366.1
UGDD01000002 Genomic DNA Translation: STJ52625.1
UGDF01000003 Genomic DNA Translation: STJ63516.1
UGDG01000002 Genomic DNA Translation: STJ71072.1
UGED01000019 Genomic DNA Translation: STM17383.1
UINI01000017 Genomic DNA Translation: SVF27114.1
UINO01000065 Genomic DNA Translation: SVF46384.1
UINY01000006 Genomic DNA Translation: SVF85166.1
UINX01000012 Genomic DNA Translation: SVF95407.1
RefSeqiWP_001105504.1, NZ_UIKP01000006.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiANM84180; ANM84180; A8V37_17380
AOT30863; AOT30863; FORC31_0394
CDU37429; CDU37429; PGD_00464
CTS07572; CTS07572; ERS085365_00903
CTU93236; CTU93236; ERS139211_00113
CTW20344; CTW20344; ERS085416_02808
CTX83969; CTX83969; ERS139235_03625
CTZ66799; CTZ66799; ERS150873_03611
KLX94354; KLX94354; SK85_03735
KQJ17118; KQJ17118; AM266_07580
KXQ42237; KXQ42237; AUQ01_02585
OAC42339; OAC42339; EC3234A_57c00810
ODH31075; ODH31075; A6803_08575
PATRICifig|562.10472.peg.3022

Phylogenomic databases

eggNOGiENOG4105E0Y Bacteria
COG1690 LUCA

Family and domain databases

Gene3Di3.90.1860.10, 1 hit
InterProiView protein in InterPro
IPR001233 RtcB
IPR036025 RtcB-like_sf
PfamiView protein in Pfam
PF01139 RtcB, 1 hit
SUPFAMiSSF103365 SSF103365, 1 hit
PROSITEiView protein in PROSITE
PS01288 UPF0027, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A024L005_ECOLX
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A024L005
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 9, 2014
Last sequence update: July 9, 2014
Last modified: December 5, 2018
This is version 50 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteomeImported
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