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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 470
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000321980
Taxonomy9913 - Bos taurus
Last modifiedJune 5, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000003055.5 from ENA/EMBL full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (M) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment, and the name of the taxonomic lineage dataset used.</p> C:1.4%[S:1.4%,D:0%],F:0%,M:98.6%,n:13335 cetartiodactyla_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Close to standard (low value)

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 133
Chromosome 271
Chromosome 185
Chromosome 212
Chromosome 263
Chromosome 62
Chromosome 116
Chromosome 44
Chromosome 1580
Chromosome 108
Chromosome 83
Chromosome 16
Chromosome 25218
Chromosome 241
Chromosome 294
Chromosome 27
Chromosome x1
Chromosome 201
Chromosome 221
Chromosome 38
Chromosome 56
Chromosome 175
Chromosome 193
Chromosome 144
Chromosome 96
Chromosome 124
Chromosome 75
Chromosome 233
Chromosome 281
Chromosome 164
Unassembled WGS sequence181

Publications

  1. "Unexpected cross-species contamination in genome sequencing projects."
    Merchant S., Wood D.E., Salzberg S.L.
    Peerj 2:E675-E675(2014) [PubMed] [Europe PMC] [Abstract]
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