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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 34,137
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000265180
Taxonomy8090 - Oryzias latipes
StrainHNI
Last modifiedNovember 5, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_002234715.1 from Ensembl full
BuscoC:0.3%[S:0.3%,D:0%],F:0%,M:99.7%,n:4584
CompletenessStandard

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 11737
Chromosome 2877
Chromosome 31470
Chromosome 41609
Chromosome 51612
Chromosome 61585
Chromosome 71776
Chromosome 81772
Chromosome 91741
Chromosome 101261
Chromosome 111298
Chromosome 121327
Chromosome 131402
Chromosome 141431
Chromosome 151282
Chromosome 161700
Chromosome 171624
Chromosome 181233
Chromosome 191328
Chromosome 201004
Chromosome 211547
Chromosome 221454
Chromosome 23930
Chromosome 241149

Publications

  1. "CpG methylation of centromeres and impact of large insertions on vertebrate speciation."
    Ichikawa K., Yoshimura J., Morishita S.
    Submitted (APR-2017) to the EMBL/GenBank/DDBJ databases
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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