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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 50,207
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000233100
Taxonomy9541 - Macaca fascicularis
Last modifiedJune 16, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_011100615.1 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (M) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment, and the name of the taxonomic lineage dataset used.</p> C:90.3%[S:43.3%,D:47%],F:1.6%,M:8%,n:13780 primates_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Close to standard (high value)

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 14723
Chromosome 22858
Chromosome 32961
Chromosome 42570
Chromosome 52032
Chromosome 62229
Chromosome 73394
Chromosome 81765
Chromosome 92069
Chromosome 102449
Chromosome 112724
Chromosome 121816
Chromosome 131774
Chromosome 142870
Chromosome 151905
Chromosome 162648
Chromosome 17925
Chromosome 18799
Chromosome 192671
Chromosome 201938
Chromosome X1893
Mitochondrion17
Unplaced
1206

Publications

  1. "Sequencing and analysis of the complete mitochondrial genome of the Macaca fascicularis."
    Yi, D., Guo, Y., Jiang, Q., Fan, J. and Lan, G.
    Submitted (APR-2009) to the EMBL/GenBank/DDBJ databases
  2. Warren W., Wilson R.K.
    Submitted (MAR-2013) to the EMBL/GenBank/DDBJ databases
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