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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 32,840
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000187609
Taxonomy49451 - Nicotiana attenuata
Straincv. UT
Last modifiedDecember 1, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_001879085.1 from ENA/EMBL full
BuscoC:92.8%[S:88.1%,D:4.7%],F:2.5%,M:4.7%,n:1440
CompletenessStandard

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 11755
Chromosome 21628
Chromosome 31179
Chromosome 4310
Chromosome 5947
Chromosome 61439
Chromosome 71638
Chromosome 8869
Chromosome 9720
Chromosome 10877
Chromosome 11871
Chromosome 12907
Unassembled WGS sequence19734

Publications

  1. "The genome of Nicotiana attenuata."
    Xu S., Brockmoeller T., Gaquerel E., Navarro A., Kuhl H., Gase K., Ling Z., Zhou W., Kreitzer C., Stanke M., Tang H., Lyons E., Pandey P., Pandey S.P., Timmermann B., Baldwin I.T.
    Submitted (NOV-2016) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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