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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 44,571
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000186698
Taxonomy8355 - Xenopus laevis
StrainJ
Last modifiedMarch 7, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_001663975.1 from ENA/EMBL full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:94.7%[S:46%,D:48.8%],F:1.1%,M:4.2%,n:5310 tetrapoda_odb10

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 8l2835
Chromosome 5s1851
Chromosome 4l2455
Chromosome 9_10l2744
Chromosome 3s1935
Chromosome 7l2409
Chromosome 5l2387
Chromosome 6l2186
Chromosome 1s2496
Chromosome 9_10s2136
Chromosome 4s1843
Chromosome 1l3895
Chromosome 7s1500
Chromosome 8s2047
Chromosome 3l3087
Chromosome 6s1544
Chromosome 2s2409
Chromosome 2l2904
Unassembled WGS sequence2044
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Main funding by: National Institutes of Health

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