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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 37,733
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000091857
Taxonomy3983 - Manihot esculenta
Straincv. AM560-2
Last modifiedMay 4, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_001659605.1 from ENA/EMBL full
BuscoC:96.9%[S:72%,D:24.9%],F:2.4%,M:0.7%,n:425
CompletenessStandard

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome lg13174
Chromosome lg22583
Chromosome lg32478
Chromosome lg41901
Chromosome lg52417
Chromosome lg62078
Chromosome lg71613
Chromosome lg81944
Chromosome lg92180
Chromosome lg101742
Chromosome lg111899
Chromosome lg121814
Chromosome lg131795
Chromosome lg141963
Chromosome lg152239
Chromosome lg161595
Chromosome lg171480
Chromosome lg181672
Unassembled WGS sequence1236

Publications

  1. "WGS assembly of Manihot esculenta."
    Bredeson J.V., Prochnik S.E., Lyons J.B., Schmutz J., Grimwood J., Vrebalov J., Bart R.S., Amuge T., Ferguson M.E., Green R., Putnam N., Stites J., Rounsley S., Rokhsar D.S.
    Submitted (FEB-2016) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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