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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 26,600
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000076858
Taxonomy35525 - Daphnia magna
StrainXinb3
Last modifiedNovember 5, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_001632505.1 from ENA/EMBL full
BuscoC:92.3%[S:91.4%,D:0.9%],F:3.8%,M:3.9%,n:1066
CompletenessClose to Standard

The waterflea Daphnia magna is a crustacean found in lakes and ponds in Europe, Africa, Asia and America. It is a well-studied ecological model species owing to its tractability under laboratory conditions, short generation time, small body size and a cyclic parthenogenetic life cycle. It has a prominent role in freshwater food webs acting as forage for many vertebrate and invertebrate predators and is a grazer of algae. Species of the genus Daphnia also serve as models in ecotoxicology and are used as sentinels for water quality.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence26600

Publications

  1. "EvidentialGene: Evidence-directed Construction of Genes on Genomes."
    Gilbert D.G., Choi J.-H., Mockaitis K., Colbourne J., Pfrender M.
    Submitted (MAR-2016) to the EMBL/GenBank/DDBJ databases
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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