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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 14,160
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000070720
Taxonomy229533 - Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
StrainPH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084
Last modifiedNovember 24, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_900044135.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (Wheat head blight fungus) (Fusarium graminearum) pan proteome (fasta)
BuscoC:99%[S:98.9%,D:0.1%],F:0.8%,M:0.2%,n:3725
CompletenessStandard

Gibberella zeae, otherwise known by its anamorph (asexual) name Fusarium graminearum, causes several diseases of cereal grains, including Gibberella ear rot in corn and Fusarium head blight or scab in wheat and other grains. Fusaria have very distinctive banana-shaped conidia.

Gibberella zeae can produce the trichothecene mycotoxin vomitoxin which inhibits protein biosynthesis and zearalenone, a potent estrogenic metabolite. This latter chemical can reduce fecundity in pigs fed infected corn. Gibberella zeae is homothallic - it can undergo sexual development and reproduction without needing to encounter an opposite mating type.

The genome sequence, assembly and gene models were generated by the Broad Institute as part of their work on the Fusarium Comparative Sequencing Project. The genome has a total estimated size of 36.5 Mb and was sequenced to a coverage of 10x in 31 scaffolds. The genome is predicted to contain 13,321 protein-coding-genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 14396
Chromosome 23650
Chromosome 33089
Chromosome 43026

Publications

  1. "Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium."
    Ma L.-J., van der Does H.C., Borkovich K.A., Coleman J.J., Daboussi M.-J., Di Pietro A., Dufresne M., Freitag M., Grabherr M., Henrissat B., Houterman P.M., Kang S., Shim W.-B., Woloshuk C., Xie X., Xu J.-R., Antoniw J., Baker S.E.
    Rep M.
    Nature 464:367-373(2010) [PubMed] [Europe PMC] [Abstract]
  2. "The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum."
    King R., Urban M., Hammond-Kosack M.C.U., Hassani-Pak K., Hammond-Kosack K.E.
    BMC Genomics 16:544-544(2015) [PubMed] [Europe PMC] [Abstract]
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