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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 13,959
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000046395
Taxonomy70415 - Trichuris muris
StrainEdinburgh
Last modifiedDecember 4, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000612645.1 from WormBase full
BuscoC:0%[S:0%,D:0%],F:0%,M:100%,n:982
CompletenessOutlier

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence13959

Publications

  1. Aslett M.
    Submitted (NOV-2013) to the EMBL/GenBank/DDBJ databases
  2. "The whipworm genome and dual-species transcriptomics of an intimate host-pathogen interaction."
    Foth B.J., Tsai I.J., Reid A.J., Bancroft A.J., Nichol S., Tracey A., Holroyd N., Cotton J.A., Stanley E.J., Zarowiecki M., Liu J.Z., Huckvale T., Cooper P.J., Grencis R.K., Berriman M.
    Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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