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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 23,744
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000029981
Taxonomy3659 - Cucumis sativus
Last modifiedNovember 5, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000004075.2 from ENA/EMBL full
BuscoC:90%[S:87.9%,D:2.1%],F:3.5%,M:6.5%,n:1440
CompletenessStandard

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 13493
Chromosome 22933
Chromosome 34908
Chromosome 42844
Chromosome 53171
Chromosome 63941
Chromosome 72454

Publications

  1. "Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types."
    Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., Sobral B.W., Xu Y., Huang S., Fei Z.
    BMC Genomics 11:384-384(2010) [PubMed] [Europe PMC] [Abstract]
  2. "The genome of the cucumber, Cucumis sativus L."
    Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., Staub J.
    Li S.
    Nat. Genet. 41:1275-1281(2009) [PubMed] [Europe PMC] [Abstract]
  3. "An integrated genetic and cytogenetic map of the cucumber genome."
    Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.
    PLoS ONE 4:E5795-E5795(2009) [PubMed] [Europe PMC] [Abstract]
  4. "RNA-Seq improves annotation of protein-coding genes in the cucumber genome."
    Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.
    BMC Genomics 12:540-540(2011) [PubMed] [Europe PMC] [Abstract]
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