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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 44,721
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000028761
Taxonomy9555 - Papio anubis
Last modifiedMay 24, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000264685.2 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (M) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment, and the name of the taxonomic lineage dataset used.</p> C:96.4%[S:53.3%,D:43.1%],F:0.5%,M:3.1%,n:13780 primates_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 102116
Chromosome 201678
Chromosome 17736
Chromosome 81546
Chromosome 32496
Chromosome 72858
Chromosome 14340
Chromosome 131485
Chromosome 22406
Chromosome 192658
Chromosome 42290
Chromosome 51764
Chromosome X1714
Chromosome 112530
Chromosome 121669
Chromosome 151637
Chromosome 62035
Chromosome 91818
Chromosome 142616
Chromosome 162468
Chromosome 18715
Unplaced
1211
Mitochondrion1

Publications

  1. "Baboon phylogeny as inferred from complete mitochondrial genomes."
    Zinner D., Wertheimer J., Liedigk R., Groeneveld L.F., Roos C.
    Am. J. Phys. Anthropol. 150:133-140(2013) [PubMed] [Europe PMC] [Abstract]
  2. "Whole Genome Assembly of Papio anubis."
    Liu Y.L., Abraham K.A., Akbar H.A., Ali S.A., Anosike U.A., Aqrawi P.A., Arias F.A., Attaway T.A., Awwad R.A., Babu C.B., Bandaranaike D.B., Battles P.B., Bell A.B., Beltran B.B., Berhane-Mersha D.B., Bess C.B., Bickham C.B., Bolden T.B.
    Gibbs R.G.
    Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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