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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 130,673
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000019116
Taxonomy4565 - Triticum aestivum
Straincv. Chinese Spring
Last modifiedOctober 20, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_900519105.1 from EnsemblPlants full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:100%[S:1.2%,D:98.8%],F:0%,M:0%,n:425 viridiplantae_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Outlier

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chloroplast77
Mitochondrion35
Unplaced
130561

Publications

  1. "Chinese spring wheat (Triticum aestivum L.) chloroplast genome: complete sequence and contig clones."
    Ogihara Y., Isono K., Kojima T., Endo A., Hanaoka M., Shiina T., Terachi T., Utsugi S., Murata M., Mori N., Takumi S., Ikeo K., Gojobori T., Murai R., Murai K., Matsuoka Y., Ohnishi Y., Tajiri H., Tsunewaki K.
    Plant Mol. Biol. Rep. 18:243-253(2000)
  2. "Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome."
    Ogihara Y., Yamazaki Y., Murai K., Kanno A., Terachi T., Shiina T., Miyashita N., Nasuda S., Nakamura C., Mori N., Takumi S., Murata M., Futo S., Tsunewaki K.
    Nucleic Acids Res. 33:6235-6250(2005) [PubMed] [Europe PMC] [Abstract]
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