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Overview

StatusReference proteome
Proteinsi8,161
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000013968
Taxonomy1156913 - Amycolatopsis orientalis HCCB10007
StrainHCCB10007
Last modifiedFebruary 27, 2018
Genome assembly and annotationi GCA_000400635.2 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Amycolatopsis orientalis HCCB10007 pan proteome (fasta)

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome8112
Plasmid pXL10049

Publications

  1. "ContigScape: a Cytoscape plugin facilitating microbial genome gap closing."
    Tang B., Wang Q., Yang M., Xie F., Zhu Y., Zhuo Y., Wang S., Gao H., Ding X., Zhang L., Zhao G., Zheng H.
    BMC Genomics 2013:289-289(2013) [PubMed] [Europe PMC] [Abstract]
  2. "Complete genome sequence and comparative genomic analyses of the vancomycin-producing Amycolatopsis orientalis."
    Xu L., Huang H., Wei W., Zhong Y., Tang B., Yuan H., Zhu L., Huang W., Ge M., Yang S., Zheng H., Jiang W., Chen D., Zhao G.P., Zhao W.
    BMC Genomics 2014:363-363(2014) [PubMed] [Europe PMC] [Abstract]
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