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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 36,474
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000012960
Taxonomy214687 - Musa acuminata subsp. malaccensis
Straincv. Doubled-haploid Pahang [DH-Pahang]
Last modifiedNovember 5, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000313855.1 from EnsemblPlants full
BuscoC:86.7%[S:76.5%,D:10.3%],F:4.7%,M:8.5%,n:1440
CompletenessStandard

Musa acuminata is a diploid wild species of banana. Bananas are perennial monocotyledonous herbs of the order Zingiberales to which ginger and cardamom also belong.

Bananas are very important for food security in many tropical and subtropical countries and a large range of types can be found, including those used as vegetables and as fruits.

While domestication involved hybridization between diverse species and subspecies, much of the current production relies on clones derived from one triploid genotype - Cavendish.

Banana cultivars are derived mainly from either Musa acuminata and/or Musa balbisiana. They are sometimes diploid but are generally triploid. The genome sequenced was from DH-Pahang, a double-haploid Musa acuminata genotype of the subspecies malaccensis that contributed one of the three Musa acuminata genomes of Cavendish. Musa acuminata has a haploid chromosome number of 11, containing 390 Mb with 36,000 protein encoding genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 52967
Chromosome 33244
Chromosome 43361
Chromosome 63691
Chromosome 72759
Chromosome 83448
Chromosome 93101
Chromosome 112675
Chromosome 103149
Chromosome 12831
Chromosome 22326
Unplaced
2922
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Main funding by: National Institutes of Health

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