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StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 36,474
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000012960
Taxonomy214687 - Musa acuminata subsp. malaccensis
Straincv. Doubled-haploid Pahang [DH-Pahang]
Last modifiedOctober 20, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="">more...</a>)</p> GCA_000313855.1 from EnsemblPlants full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:91.3%[S:88.2%,D:3.1%],F:7.1%,M:1.6%,n:425 viridiplantae_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Musa acuminata is a diploid wild species of banana. Bananas are perennial monocotyledonous herbs of the order Zingiberales to which ginger and cardamom also belong.

Bananas are very important for food security in many tropical and subtropical countries and a large range of types can be found, including those used as vegetables and as fruits.

While domestication involved hybridization between diverse species and subspecies, much of the current production relies on clones derived from one triploid genotype - Cavendish.

Banana cultivars are derived mainly from either Musa acuminata and/or Musa balbisiana. They are sometimes diploid but are generally triploid. The genome sequenced was from DH-Pahang, a double-haploid Musa acuminata genotype of the subspecies malaccensis that contributed one of the three Musa acuminata genomes of Cavendish. Musa acuminata has a haploid chromosome number of 11, containing 390 Mb with 36,000 protein encoding genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 52970
Chromosome 33248
Chromosome 43362
Chromosome 63694
Chromosome 72762
Chromosome 83453
Chromosome 93106
Chromosome 112677
Chromosome 103153
Chromosome 12832
Chromosome 22327
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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