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Overview

StatusReference proteome
Proteinsi40,809
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000011750
Taxonomy51351 - Brassica rapa subsp. pekinensis
Straincv. Chiifu-401-42
Last modifiedOctober 26, 2018
Genome assembly and annotationi GCA_000309985.1 from EnsemblPlants

Brassica rapa subsp. pekinensis (Napa cabbage) is a widely cultivated vegetable that has broad green leaves with white petioles that are tightly wrapped in a cylindrical formation. The species B. rapa is used for studies into plant morphological plasticity, crop domestication and directed selection. It is also of interest due to its complex evolutionary history which includes a whole-genome triplication event between 13 and 17 million years ago.

The assembled draft genome of B. rapa subsp. pekinensis is 283.8 Mb, approximately covering more than 98% of the genome. Genetic mapping has been used to produce ten pseudo chromosomes from 90% of the assembly. Comparisons with the closely related diploid Arabidopsis thaliana, suggest that morphological plasticity within B. rapa may be the result of variation in the loss of triplicated genome segments and its large genome size could be due to transposable elements that occupy 39.5% of the genome.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome A102919
Chromosome A053633
Chromosome A063996
Chromosome A083220
Chromosome A035668
Chromosome A014129
Chromosome A042801
Chromosome A073490
Chromosome A095518
Chromosome A024178
Unplaced
1407
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Main funding by: National Institutes of Health

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