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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 40,212
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000011712
Taxonomy9685 - Felis catus
StrainAbyssinian
Last modifiedJune 29, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000181335.4 from Ensembl full
BuscoC:96.7%[S:53.1%,D:43.6%],F:0.5%,M:2.7%,n:14502
CompletenessStandard

The domestic cat is the smallest mammal in the family Felidae. Cats are active agile hunters with fast reflexes and particularly keen eyesight. They have strong, flexible bodies, sharp teeth and retractable claws. Recent archaeological findings suggest that cat-human cohabitation started almost 10,000 years ago in the Near East. The cats is widely used as a model organism for biomedical research, especially in the fields of neuroscience, endocrinology, behavioral biology and reproductive physiology.

The cat genome has 19 chromosomes containing 2.7 Gb with 20,000 protein-coding genes. The reference proteome is derived from the genome sequence published in 2007.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome A12675
Chromosome A23208
Chromosome A32288
Chromosome B12216
Chromosome B22177
Chromosome B32518
Chromosome B42600
Chromosome C13864
Chromosome C21969
Chromosome D12568
Chromosome D21382
Chromosome D31516
Chromosome D41540
Chromosome E12165
Chromosome E21973
Chromosome E31356
Chromosome F11462
Chromosome F2900
Chromosome X1455
Unplaced
376
Mitochondrion13

Publications

  1. "Sequence assembly of the Felis catus genome version 6.2."
    Hillier L.W., Warren W., Obrien S., Wilson R.K.
    Submitted (SEP-2011) to the EMBL/GenBank/DDBJ databases
  2. "Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA tandem repeat (Numt) in the nuclear genome."
    Lopez J.V., Cevario S., O'Brien S.J.
    Genomics 33:229-246(1996) [PubMed] [Europe PMC] [Abstract]
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