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StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 53,106
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000011115
Taxonomy4113 - Solanum tuberosum
Straincv. DM1-3 516 R44
Last modifiedMarch 9, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="">more...</a>)</p> GCA_000226075.1 from EnsemblPlants full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:81.7%[S:61.9%,D:19.8%],F:2.7%,M:15.5%,n:5950 solanales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Close to standard (high value)

Solanum tuberosum (potato) is considered to be the fourth most important food crop, after wheat, maize and rice. Potatoes are a member of the Solanaceae family (which includes tomatoes and chili peppers) and originated in South America. There are very many different varieties of potato and a large number of wild relatives, providing a diverse genetic base for crop improvement.

The potato is cultivated in temperate and subtropical regions across the world and is propagated vegetatively.

The potato proteome is derived from the potato genome as sequenced by the Potato Genome Sequence Consortium ( Many potato lines are tetraploid; however, the sequenced accession was a homozygous diploid line (double haploid) of Solanum tuberosum phureja, which has a haploid chromosome number of 12, containing 800 Mb and 52,000 protein-coding genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence53105


  1. "Genome sequence and analysis of the tuber crop potato."
    The Potato Genome Sequencing Consortium
    Nature 475:189-195(2011) [PubMed] [Europe PMC] [Abstract]
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