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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 53,105
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000011115
Taxonomy4113 - Solanum tuberosum
Straincv. DM1-3 516 R44
Last modifiedJanuary 9, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000226075.1 from EnsemblPlants full
BuscoC:86%[S:63.2%,D:22.8%],F:6.2%,M:7.8%,n:1440
CompletenessOutlier

Solanum tuberosum (potato) is considered to be the fourth most important food crop, after wheat, maize and rice. Potatoes are a member of the Solanaceae family (which includes tomatoes and chili peppers) and originated in South America. There are very many different varieties of potato and a large number of wild relatives, providing a diverse genetic base for crop improvement.

The potato is cultivated in temperate and subtropical regions across the world and is propagated vegetatively.

The potato proteome is derived from the potato genome as sequenced by the Potato Genome Sequence Consortium (potatogenome.net). Many potato lines are tetraploid; however, the sequenced accession was a homozygous diploid line (double haploid) of Solanum tuberosum phureja, which has a haploid chromosome number of 12, containing 800 Mb and 52,000 protein-coding genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence53105

Publications

  1. "Genome sequence and analysis of the tuber crop potato."
    The Potato Genome Sequencing Consortium
    Nature 475:189-195(2011) [PubMed] [Europe PMC] [Abstract]
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