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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 6,032
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000010087
Taxonomy884204 - Burkholderia pseudomallei (strain 1026b)
Strain1026b
Last modifiedOctober 18, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000260515.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Burkholderia pseudomallei (strain K96243) pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:98.1%[S:97.8%,D:0.3%],F:0.4%,M:1.5%,n:688 burkholderiales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Burkholderia pseudomallei is the causative agent of melioidosis, a disease that is endemic in Southeast Asia. Besides humans, melioidosis can affect animals such as sheep, goats, horses, swine, dogs and cats. Transmission occurs by contact with contaminated soil and water, through skin abrasions or inhalation of dust. In northeastern Thailand, B.pseudomallei accounts for 20% of the septicaemias.

Strain 1026b was isolated in Thailand in 1993 from the blood of patient with septicemium melioidosis. It is one of the models used for genetic studies of B. pseudomallei pathogenesis and antibiotic resistance (adapted from PMID 22615773).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 22453
Chromosome 13586
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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