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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 9,252
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000009297
Taxonomy339724 - Ajellomyces capsulatus (strain NAm1 / WU24)
StrainNAm1 / WU24
Last modifiedAugust 19, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000149585.1 from ENA/EMBL full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:80.8%[S:80.7%,D:0.1%],F:12.4%,M:6.8%,n:4862 onygenales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Ajellomyces capsulate (syn. Histoplasma capsulatum) is the causal agent of Histoplasmosis, also known as Darling's disease. Found throughout the world commonly in bat and bird droppings, the disease is contracted by breathing in the fungal spores. Most people do not display any symptoms and are unaware they are infected, but in immunocompromised individuals the disease can spread from the lungs to other organs of the body and can be fatal if left untreated.

The assembled nuclear genome of A. capsulate strain NAm1 is approximately 33 Mb and contains over 9,300 predicted protein-coding genes. Comparisons with its distant pathogenic relatives the Coccidioides, found that although A. capsulate does not display the protease expansions observed in the genomes of the Coccidioides it has undergone a similar reduction in plant decay enzymes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence9252
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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