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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 1,583
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000009296
Taxonomy647113 - Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1)
StrainDSM 14208 / JCM 11175 / IH1
Last modifiedMarch 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000179575.2 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Methanococcus aeolicus (strain ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3) pan proteome (fasta)
BuscoC:98.3%[S:98.2%,D:0.1%],F:0.2%,M:1.5%,n:958
CompletenessStandard

Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) is a strictly anaerobic, thermophilic, methane-producing archaeon isolated from a deep-sea hydrothermal vent chimney at the Iheya Ridge, in the Okinawa Trough, Japan. The cells are highly motile, irregular cocci, with a polar bundle of flagella. Growth is observed between 40 and 75 degrees Celsius with an optimum around 60-65 degrees Celsius and between pH 4.5 and 8.5 with an optimum around pH 6-7. It grows over the concentration range 12-96 g/l sea salts , with optimum growth at 25-50 g/l sea salts at 62 degrees Celsius and pH 7. It is resistant to streptomycin. Methanothermococcus okinawensis is able to use hydrogen and carbon dioxide as sole sources of energy and carbon. Formate can serve as an alternative energy source. It utilizes ammonium ions as a nitrogen source but could not use nitrite or nitrate. The presence of magnetite (Fe3O4) improved growth. (Adapted from PMID: 12148612).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome1573
Plasmid pMETOK0110

Publications

  1. "Complete sequence of chromosome of Methanothermococcus okinawensis IH1."
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Held B., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Sieprawska-Lupa M., Takai K.
    Woyke T.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
  2. "Complete sequence of plasmid of Methanothermococcus okinawensis IH1."
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Held B., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Sieprawska-Lupa M., Takai K.
    Woyke T.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
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