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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 4,703
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000009235
Taxonomy443218 - Hoyosella subflava (strain DSM 45089 / JCM 17490 / NBRC 109087 / DQS3-9A1)
StrainDSM 45089 / DQS3-9A1
Last modifiedJanuary 16, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000214175.1 from ENA/EMBL full
BuscoC:98.3%[S:98%,D:0.3%],F:1.4%,M:0.3%,n:352
CompletenessStandard

Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1) is a marine heterotrophic Gram-positive bacterium isolated from crude oil-polluted soil in the Daqing Oilfield in China. It possesses genes involved in hydrocarbon degradation pathways. (Adaptated from PMID: 21725023).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome4556
Plasmid pAS9A-127
Plasmid pAS9A-2121

Publications

  1. "Complete genome sequence of Amycolicicoccus subflavus DQS3-9A1T, an actinomycete isolated from crude oil-polluted soil."
    Cai M., Chen W.M., Nie Y., Chi C.Q., Wang Y.N., Tang Y.Q., Li G.Y., Wu X.L.
    J. Bacteriol. 193:4538-4539(2011) [PubMed] [Europe PMC] [Abstract]
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