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Overview

StatusReference proteome
Proteinsi29,907
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000009183
Taxonomy29760 - Vitis vinifera
Straincv. Pinot noir / PN40024
Last modifiedFebruary 9, 2019
Genome assembly and annotationi GCA_000003745.2 from ENA/EMBL

Vitis vinifera (grape vine) is a flowering plant of the family Vitaceae which includes the Virginia creeper. The grape vine is native to the Mediterranean and Asia Minor, and was first cultivated by man over 5,000 years ago.

Vitis vinifera is grown for table grapes, dried fruit products and wine production and is cultivated in all areas of the world that provide warm dry summers and mild winters.

Vitis vinifera has a haploid chromosome number of 19, containing 490 Mb with 30,000 protein-coding genes. The line selected for sequencing was PN40024, which was originally derived from Pinot Noir, and was bred close to full homozygosity (about 93%) by successive self-fertilization (www.ncbi.nlm.nih.gov/pubmed/10617198).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome 11544
Chromosome 21098
Chromosome 31276
Chromosome 41499
Chromosome 51610
Chromosome 61386
Chromosome 71576
Chromosome 81624
Chromosome 91305
Chromosome 10999
Chromosome 111194
Chromosome 121480
Chromosome 131616
Chromosome 141831
Chromosome 151134
Chromosome 161306
Chromosome 171098
Chromosome 182294
Chromosome 191340
Unassembled WGS sequence2567
Chloroplast81
Mitochondrion73

Publications

  1. "Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids."
    Jansen R.K., Kaittanis C., Lee S.-B., Saski C., Tomkins J., Alverson A.J., Daniell H.
    BMC Evol. Biol. 2006:32-32(2006) [PubMed] [Europe PMC] [Abstract]
  2. "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla."
    Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.
    Wincker P.
    Nature 2007:463-467(2007) [PubMed] [Europe PMC] [Abstract]
  3. "mtDNA of Vitis vinifera and the issue of rampant horizontal gene transfer."
    Goremykin V., Salamini F., Velasco R., Viola R.
    Mol. Biol. Evol. 2008:0-0(2008)
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