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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 29,907
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000009183
Taxonomy29760 - Vitis vinifera
Straincv. Pinot noir / PN40024
Last modifiedJanuary 15, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000003745.2 from ENA/EMBL full
BuscoC:95.8%[S:93.8%,D:2%],F:2.8%,M:1.3%,n:1440
CompletenessStandard

Vitis vinifera (grape vine) is a flowering plant of the family Vitaceae which includes the Virginia creeper. The grape vine is native to the Mediterranean and Asia Minor, and was first cultivated by man over 5,000 years ago.

Vitis vinifera is grown for table grapes, dried fruit products and wine production and is cultivated in all areas of the world that provide warm dry summers and mild winters.

Vitis vinifera has a haploid chromosome number of 19, containing 490 Mb with 30,000 protein-coding genes. The line selected for sequencing was PN40024, which was originally derived from Pinot Noir, and was bred close to full homozygosity (about 93%) by successive self-fertilization (www.ncbi.nlm.nih.gov/pubmed/10617198).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 11535
Chromosome 1, unordered8
Chromosome 21097
Chromosome 31243
Chromosome 3, unordered32
Chromosome 41495
Chromosome 4, unordered6
Chromosome 51596
Chromosome 5, unordered14
Chromosome 61386
Chromosome 71493
Chromosome 7, unordered80
Chromosome 81623
Chromosome 91293
Chromosome 9, unordered11
Chromosome 10942
Chromosome 10, unordered57
Chromosome 111181
Chromosome 11, unordered13
Chromosome 121434
Chromosome 12, unordered46
Chromosome 131438
Chromosome 13, unordered176
Chromosome 141828
Chromosome 151132
Chromosome 161259
Chromosome 16, unordered46
Chromosome 171080
Chromosome 17, unordered18
Chromosome 182052
Chromosome 18, unordered239
Chromosome 191339
Chloroplast81
Unassembled WGS sequence, unordered2561
Mitochondrion73

Publications

  1. "mtDNA of Vitis vinifera and the issue of rampant horizontal gene transfer."
    Goremykin V., Salamini F., Velasco R., Viola R.
    Mol. Biol. Evol. 0:0-0(2008)
  2. "Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids."
    Jansen R.K., Kaittanis C., Lee S.-B., Saski C., Tomkins J., Alverson A.J., Daniell H.
    BMC Evol. Biol. 6:32-32(2006) [PubMed] [Europe PMC] [Abstract]
  3. "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla."
    Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.
    Wincker P.
    Nature 449:463-467(2007) [PubMed] [Europe PMC] [Abstract]
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