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Overview

Proteinsi2,470
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000009149
Taxonomy481448 - Methylacidiphilum infernorum (isolate V4)
StrainIsolate V4
Last modifiedDecember 11, 2018
Genome assembly and annotationi GCA_000019665.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Methylacidiphilum fumariolicum (strain SolV) () pan proteome (fasta)

Methylacidiphilum infernorum (isolate V4) is an extremely acidophilic aerobic methanotrophic bacterium isolated from the Hell's Gate (Tikitere), a methane-emitting geothermal field in the North of New Zealand. It is one of the first methanotrophic representative of the Verrucomicrobia, a diverse phylum that unites organisms with a remarkably broad range of lifestyles (many terrestrial and aquatic habitats), from intracellular parasites with some of the smallest known genomes to complex soil organisms. Methylacidiphilum infernorum , but also Acidimethylosilex fumarolicum (strain SolV) from Solfatara volcano mudpot (Italy), and Methyloacida kamchatkensis (strain Kam1) from an acidic hot spring in Kamchatka (Russia), are the the only known group of aerobic methanotrophs outside of the Proteobacteria phylum, and are by far the most acidophilic bacteria capable of methane oxidation The organism grows optimally at pH between 2.0 to 2.5 and temperature of 60 degrees Celsius when supplemented with 25% (v/v) methane as the sole source of energy. It is able to utilize methane as sole carbon source. M. infernorum possesses a streamlined genome but seems to have acquired numerous genes including those for enzymes of methylotrophic pathways via horizontal gene transfer, in particular, from Proteobacteria.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome2470

Publications

  1. "Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia."
    Hou S., Makarova K.S., Saw J.H., Senin P., Ly B.V., Zhou Z., Ren Y., Wang J., Galperin M.Y., Omelchenko M.V., Wolf Y.I., Yutin N., Koonin E.V., Stott M.B., Mountain B.W., Crowe M.A., Smirnova A.V., Dunfield P.F.
    Alam M.
    Biol. Direct 2008:26-26(2008) [PubMed] [Europe PMC] [Abstract]
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