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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 37,508
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000009136
Taxonomy9913 - Bos taurus
StrainHereford
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_002263795.2 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (M) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment, and the name of the taxonomic lineage dataset used.</p> C:97%[S:54.3%,D:42.7%],F:0.9%,M:2.1%,n:13335 cetartiodactyla_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unplaced
2354
Chromosome 11470
Chromosome 21484
Chromosome 32007
Chromosome 41216
Chromosome 52012
Chromosome 6969
Chromosome 71980
Chromosome 81130
Chromosome 9832
Chromosome 101536
Chromosome 111598
Chromosome 12610
Chromosome 131216
Chromosome 14741
Chromosome 151464
Chromosome 161129
Chromosome 171025
Chromosome 181868
Chromosome 191969
Chromosome 20539
Chromosome 21832
Chromosome 22978
Chromosome 231082
Chromosome 24511
Chromosome 251121
Chromosome 26678
Chromosome 27394
Chromosome 28501
Chromosome 29996
Chromosome X1279
Mitochondrion18
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Main funding by: National Institutes of Health

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