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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 37,513
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000009136
Taxonomy9913 - Bos taurus
StrainHereford
Last modifiedDecember 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_002263795.2 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:97.1%[S:54.4%,D:42.7%],F:0.9%,M:2.1%,n:13335 cetartiodactyla_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unplaced
2352
Chromosome 11470
Chromosome 21485
Chromosome 32007
Chromosome 41216
Chromosome 52012
Chromosome 6970
Chromosome 71981
Chromosome 81130
Chromosome 9832
Chromosome 101536
Chromosome 111600
Chromosome 12610
Chromosome 131216
Chromosome 14743
Chromosome 151465
Chromosome 161129
Chromosome 171024
Chromosome 181870
Chromosome 191969
Chromosome 20541
Chromosome 21832
Chromosome 22978
Chromosome 231082
Chromosome 24511
Chromosome 251121
Chromosome 26678
Chromosome 27395
Chromosome 28501
Chromosome 29997
Chromosome X1281
Mitochondrion18
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Main funding by: National Institutes of Health

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