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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 7,960
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008980
Taxonomy981087 - Leishmania donovani (strain BPK282A1)
StrainBPK282A1
Last modifiedAugust 22, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000227135.2 from ENA/EMBL full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:99.2%[S:98.5%,D:0.8%],F:0%,M:0.8%,n:130 euglenozoa_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 183
Chromosome 269
Chromosome 396
Chromosome 4124
Chromosome 5121
Chromosome 6133
Chromosome 7122
Chromosome 8113
Chromosome 9161
Chromosome 10135
Chromosome 11131
Chromosome 12102
Chromosome 13158
Chromosome 14152
Chromosome 15161
Chromosome 16171
Chromosome 17152
Chromosome 18166
Chromosome 19160
Chromosome 20176
Chromosome 21220
Chromosome 22160
Chromosome 23189
Chromosome 24240
Chromosome 25255
Chromosome 26263
Chromosome 27241
Chromosome 28311
Chromosome 29296
Chromosome 30370
Chromosome 31327
Chromosome 32404
Chromosome 33340
Chromosome 34428
Chromosome 35517
Chromosome 36721

Publications

  1. "Whole genome sequencing of Leishmania donovani clinical lines reveals dynamic variation related to drug resistance."
    Downing T., Imamura H., Sanders M., Decuypere S., Hertz-Fowler C., Clark T.G., Rijal S., Sundar S., Quail M.A., De Doncker S., Maes I., Vanaerschot M., Stark O., Schonian G., Dujardin J.C., Berriman M.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
  2. "Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance."
    Downing T., Imamura H., Decuypere S., Clark T.G., Coombs G.H., Cotton J.A., Hilley J.D., de Doncker S., Maes I., Mottram J.C., Quail M.A., Rijal S., Sanders M., Schonian G., Stark O., Sundar S., Vanaerschot M., Hertz-Fowler C., Dujardin J.C., Berriman M.
    Genome Res. 21:2143-2156(2011) [PubMed] [Europe PMC] [Abstract]
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