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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 21,137
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008912
Taxonomy9646 - Ailuropoda melanoleuca
Last modifiedJanuary 29, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000004335.1 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:94%[S:88.6%,D:5.4%],F:1.8%,M:4.2%,n:14502 carnivora_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

The panda, or giant panda, is a mammal belonging to the Ursidae family, however, its primary diet is herbivorous. It is native to the southern central China and the wild population consists of no more than a few thousands of animals. Therefore, the panda is known as a conservation-reliant endangered species. The animal is highly specialized to live in forests and feed on bamboo. Panda puppies, immediately after birth, weigh no more than a mouse. The animals can communicate with each other vocally: at least 11 different sounds have been identified. The evolutionary origin of the panda lineage is very poorly understood, and therefore it is still a matter of controversy today. The panda genome has 20 pairs of autosomes and one pair of sex chromosomes. The reference proteome is derived from the genome sequence published in 2010.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence21123
Mitochondrion14
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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