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Overview

StatusReference proteome
Proteinsi6,797
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008854
StrainPuerto Rican
Last modifiedDecember 20, 2018
Genome assembly and annotationi GCA_000237925.2 from WormBase

The blood fluke Schistosoma mansoni is an important human parasite. It causes the debilitating disease intestinal schistosomiasis, a major global health problem affecting around 83 million people in 56 countries (mainly in Africa and South America). While humans are the primary host, the S. mansoni life cycle also involves transmission to and from an intermediate freshwater snail host, and thus schistosomiasis (bilharzia) is closely linked with poverty and poor sanitation.

The S. mansoni genome, derived from cercaria (larvae) of a Puerto Rican isolate, was first released in 2009. It is 363 Mb in size and contains around 12,000 protein-coding genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome 52
Chromosome 61
Chromosome 35
Chromosome 40
Chromosome W8
Chromosome 71
Chromosome 22
Chromosome 112
Unassembled WGS sequence6766

Publications

  1. Aslett M.
    Submitted (SEP-2011) to the EMBL/GenBank/DDBJ databases
  2. "A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni."
    Protasio A.V., Tsai J.I., Babbage A., Nichol S., Hunt M., de Silva N., Anderson T.J.C., Clark R.C., Davidson C., Dillon G.P., Holroyd N., LoVerde P.T., Lloyd C., McQuillan J., Oliveira G., Otto T.D., Parker-Manuel S.J., Quail M.A.
    Berriman M.
    Submitted (OCT-2011) to the EMBL/GenBank/DDBJ databases
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