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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 6,858
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008854
Taxonomy6183 - Schistosoma mansoni
StrainPuerto Rican
Last modifiedSeptember 23, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000237925.2 from WormBase

The blood fluke Schistosoma mansoni is an important human parasite. It causes the debilitating disease intestinal schistosomiasis, a major global health problem affecting around 83 million people in 56 countries (mainly in Africa and South America). While humans are the primary host, the S. mansoni life cycle also involves transmission to and from an intermediate freshwater snail host, and thus schistosomiasis (bilharzia) is closely linked with poverty and poor sanitation.

The S. mansoni genome, derived from cercaria (larvae) of a Puerto Rican isolate, was first released in 2009. It is 363 Mb in size and contains around 12,000 protein-coding genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Unassembled WGS sequence6858

Publications

  1. "A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni."
    Protasio A.V., Tsai J.I., Babbage A., Nichol S., Hunt M., de Silva N., Anderson T.J.C., Clark R.C., Davidson C., Dillon G.P., Holroyd N., LoVerde P.T., Lloyd C., McQuillan J., Oliveira G., Otto T.D., Parker-Manuel S.J., Quail M.A.
    Berriman M.
    Submitted (OCT-2011) to the EMBL/GenBank/DDBJ databases
  2. Aslett M.
    Submitted (SEP-2011) to the EMBL/GenBank/DDBJ databases
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