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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 2,352
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008838
Taxonomy378753 - Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)
StrainATCC 9341 / DSM 348 / NBRC 103217 / DC2201
Last modifiedJuly 15, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000010285.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) pan proteome (fasta)

Kocuria rhizophila (strain ATCC 9341 / NBRC 12708 / DC2201) is a coccoid, halotolerant (tolerated up to 10% NaCl in growth media), phenol-degrading Gram-positive bacterium isolated from the rhizosphere of narrowleaf cattail (Typha angustifolia). Members of the genus Kocuria were isolated from a wide variety of natural sources including mammalian skin, soil, the rhizosphere, fermented foods, clinical specimens, fresh water and marine sediments, suggesting that each Kocuria species is highly adapted to respective ecological niche. K. rhizophila is also important in industrial applications; e.g., due to its small genome size, ability to grow rapidly and at high cell density, and robustness of the cells at various growth conditions, it would be highly advantageous for the development of bacterial bioconversion system which could be used under harsh conditions such as in organic solvents. The presence of probable metabolic pathways for the transformation of phenolic compounds generated from the decomposition of plant materials, and the presence of a large number of genes associated with membrane transport, particularly amino acid transporters and drug efflux pumps, may contribute to the organisms utilization of root exudates as well as the tolerance to various organic compounds.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome2352
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Main funding by: National Institutes of Health

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