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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 44,786
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008810
Taxonomy15368 - Brachypodium distachyon
StrainBd21
Last modifiedJanuary 9, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000005505.4 from EnsemblPlants full
BuscoC:98.8%[S:64.7%,D:34.1%],F:0.6%,M:0.6%,n:1440
CompletenessOutlier

Brachypodium distachyon (purple false brome) is an annual grass from the family Poaceae (formerly known as the Gramineae) and is endemic to the Mediterranean and Middle East.

Scientific interest in Brachypodium distachyon arises from its membership of the same subfamily of the Poaceae as the cereal crops wheat, rye and barley, and the forage and turf grasses (subfamily Pooidae). Economically important members of this subfamily, notably wheat, have large and complex genomes, so Brachypodium distachyon serves as a valuable model organism for this taxonomic group.

Brachypodon distachyon has a haploid chromosome number of 5, containing 270 Mb with 30,000 protein-coding genes. The diploid inbred line Bd21 was sequenced.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 112882
Chromosome 210082
Chromosome 39898
Chromosome 47534
Chromosome 54347
Unplaced
12

Publications

  1. "Genome sequencing and analysis of the model grass Brachypodium distachyon."
    International Brachypodium Initiative
    Nature 463:763-768(2010) [PubMed] [Europe PMC] [Abstract]
  2. "The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes."
    Bortiri E., Coleman-Derr D., Lazo G.R., Anderson O.D., Gu Y.Q.
    BMC Res. Notes 1:61-61(2008) [PubMed] [Europe PMC] [Abstract]
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