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Overview

StatusReference proteome
Proteinsi11,478
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008784
Taxonomy756982 - Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491)
StrainATCC 24927 / CBS 115.81 / DSM 1491
Last modifiedFebruary 27, 2018
Genome assembly and annotationi GCA_000225545.1 from ENA/EMBL

Arthrobotrys oligospora (syn. Didymozoophaga oligospora) is a predacious fungus from the family Orbiliaceae. An adaptable fungus, strains have been found in a diverse range of soils where they can act as saprophytes, fungal pathogens and colonise plant roots to obtain nutrients. In the presence of nematodes they can also form complex three-dimensional network traps making them a biocontrol candidate for parasitic plant and animal nematodes, and in 2011 it was the first nematode-trapping fungi to have its genome sequenced.

The sequenced genome of A. oligospora is 40 Mb and contains 11,479 predicted genes. Comparative analyses revealed that it shares more genes with pathogenic fungi than non-pathogenic fungi. A combination of genomic, proteomic and qPCR data led to a hypothesis of trap formation involving the activation of multiple signal transduction pathways by the presence of the nematodes which regulate downstream genes involved in energy metabolism, biosynthesis of the cell wall and adhesive proteins, cell division, glycerol accumulation and peroxisome biogenesis.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Unassembled WGS sequence11478

Publications

  1. "Genomic and proteomic analyses of the fungus Arthrobotrys oligospora provide insights into nematode-trap formation."
    Yang J., Wang L., Ji X., Feng Y., Li X., Zou C., Xu J., Ren Y., Mi Q., Wu J., Liu S., Liu Y., Huang X., Wang H., Niu X., Li J., Liang L., Luo Y.
    Zhang K.-Q.
    PLoS Pathog. 2011:E1002179-E1002179(2011) [PubMed] [Europe PMC] [Abstract]
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