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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 6,307
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008709
Taxonomy698936 - Sinorhizobium meliloti (strain BL225C)
StrainBL225C
Last modifiedJune 29, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000147775.3 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) pan proteome (fasta)
BuscoC:100%[S:99.4%,D:0.6%],F:0%,M:0%,n:639

Gram-negative nitrogen-fixing bacteria living in soil and able to establish a symbiosis with host plants from the genera Medicago, Melilotus and Trigonella leading to the formation of nodules on roots.

Strain BL225C was isolated from an alfalfa (Medicago sativa) field in Italy, and has been found to be more effective in increasing plant growth of M. truncatula and alfalfa plants than strain AK83, which make large numbers of immature nodules. Both strains have been sequenced in order to study the pangenome of this economically important bacteria. BL225C has a larger genome than the common laboratory strain Rm1021, as well as more type IV secretion systems. Comparisons of 4 fully sequenced bacteria suggest a core genome of 5075 orthologous groups, with 3810 orthologous groups in the accessory genome (adapted from PMID 21569405).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome3402
Plasmid pSINMEB011405
Plasmid pSINMEB021515
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Main funding by: National Institutes of Health

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