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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 3,255
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008561
Taxonomy96561 - Desulfococcus oleovorans (strain DSM 6200 / Hxd3)
StrainDSM 6200 / Hxd3
Last modifiedSeptember 28, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000018405.1 from ENA/EMBL

Desulfococcus oleovorans (strain DSM 6200 / Hxd3) is an alkane-degrading sulfate-reducing Gram-negative bacterium isolated from the saline water phase of an oil-water separator from a northern German oil field. Hxd3 is a delta-proteobacterium able to grow anaerobically on C12 to C20 alkanes as growth substrates and completely oxidize them to carbon dioxide by coupling to sulfate reduction. Alkane degradation in Hxd3 involves the activation of alkanes via carboxylation at C3, with subsequent elimination of the terminal and subterminal carbons.This yields a fatty acid that is one carbon shorter than the parent alkane. Hxd3 is the only pure culture that is known to carboxylate aliphatic hydrocarbons.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome3255

Publications

  1. "Complete sequence of Desulfococcus oleovorans Hxd3."
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.
    Richardson P.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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