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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 6,403
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008330
Taxonomy395492 - Rhizobium leguminosarum bv. trifolii (strain WSM2304)
StrainWSM2304
Last modifiedSeptember 28, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000021345.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Rhizobium etli (strain CFN 42 / ATCC 51251) pan proteome (fasta)

Rhizobium leguminosarum is a widely studied alpha-proteobacterial N2-fixing legume symbiont of legumes. It has three biovars - viciae, trifolii, phaseoli - that differ in their host specificity. The host-specificity genes are carried on large plasmids that also carry the genes for nitrogen fixation. All strains of R. leguminosarum have several large plasmids, but the number and sizes of plasmids varies among strains. This large number of plasmids distinguishes R. leguminosarum from the other rhizobia for which complete genome sequences have been determined.

WSM2304 is able to nodulate American and African perennial clovers, while the dissimilar strain WSM1325 nodulates many perennial clovers of Mediterranean origin used in farming and is one of the most important clover inoculants. It is important to understand this incompatibility.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome4320
Plasmid pRLG2011155
Plasmid pRLG202450
Plasmid pRLG204223
Plasmid pRLG203255

Publications

  1. "Complete sequence of chromosome of Rhizobium leguminosarum bv. trifolii WSM2304."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Yates R.
    Reeve W.
    Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
  2. "Complete sequence of plasmid 3 of Rhizobium leguminosarum bv. trifolii WSM2304."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Yates R.
    Reeve W.
    Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
  3. "Complete sequence of plasmid 4 of Rhizobium leguminosarum bv. trifolii WSM2304."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Yates R.
    Reeve W.
    Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
  4. "Complete sequence of plasmid 1 of Rhizobium leguminosarum bv. trifolii WSM2304."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Yates R.
    Reeve W.
    Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
  5. "Complete genome sequence of Rhizobium leguminosarum bv trifolii strain WSM2304, an effective microsymbiont of the South American clover Trifolium polymorphum."
    Reeve W., O'Hara G., Chain P., Ardley J., Brau L., Nandesena K., Tiwari R., Malfatti S., Kiss H., Lapidus A., Copeland A., Nolan M., Land M., Ivanova N., Mavromatis K., Markowitz V., Kyrpides N., Melino V.
    Howieson J.
    Stand Genomic Sci. 2010:66-76(2010) [PubMed] [Europe PMC] [Abstract]
  6. "Complete sequence of plasmid 2 of Rhizobium leguminosarum bv. trifolii WSM2304."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Yates R.
    Reeve W.
    Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
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