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StatusReference proteome
Proteinsi <p>Identifier for the genome assembly (<a href="">more...</a>)</p> 2,958
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008297
Taxonomy983544 - Lacinutrix sp. (strain 5H-3-7-4)
Last modifiedNovember 9, 2018
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="">more...</a>)</p> GCA_000211855.3 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Lacinutrix sp. (strain 5H-3-7-4) pan proteome (fasta)

Lacinutrix sp. (strain 5H-3-7-4) is a marine heterotrophic Gram-negative bacterium isolated from subseafloor sediments at Suruga Bay (Japan) at depths of 41 meters using a mixture of cellulose, xylan, and chitin as the sole carbon sources in enrichment cultures. It encodes putatively novel enzymes involved in cellulose, hemicellulose, and chitin metabolism. It possesses genes for carbohydrate-active enzymes belonging to various glycoside hydrolase families. (Adaptated from PMID: 21725025).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)


  1. "Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae."
    Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A.
    Antranikian G.
    J. Bacteriol. 2011:4545-4546(2011) [PubMed] [Europe PMC] [Abstract]
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