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Overview

StatusReference proteome
Proteinsi3,996
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008243
Taxonomy309800 - Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
StrainATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2
Last modifiedNovember 9, 2018
Genome assembly and annotationi GCA_000025685.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) pan proteome (fasta)

Haloferax volcanii (strain ATCC 29605 / DSM 3757 / IFO 14742 / NCIMB 2012 / DS2) is a moderate halophilic archaeon isolated from bottom sediment from the Dead Sea. It is named in honour of Benjamin Volcani who pioneered the microbiology of the Dead Sea. H.volcanii possesses the properties of the halobacteria, but differs from the known species in two important respects; the cells are disc shaped and often cupped when grown under optimum conditions, and the optimum requirements for sodium chloride is in the range 1.7-2.5 molar which is about half of that generally reported for the halobacteria. The optimum sodium chloride concentration for growth is close to that found in the Dead Sea and the tolerance for magnesium chloride is very high (adapted from PMID: 1190944 and 20333302). A number of strains of DS2 have been derived for use in transformation, among them are DS70 (see PMID 11283291), WFD11 (see PMID 2825193) and WR 340 (see PMID 12533452).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome2965
Plasmid pHV175
Plasmid pHV26
Plasmid pHV3375
Plasmid pHV4585
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Main funding by: National Institutes of Health

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