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Overview

StatusReference proteome
Proteinsi40,707
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008227
Taxonomy9823 - Sus scrofa
StrainDuroc
Last modifiedOctober 26, 2018
Genome assembly and annotationi GCA_000003025.6 from Ensembl

Sus scrofa, the domestic pig, is a member of the Artiodactyla (even-toed ungulates). First domesticated around 10,000 years ago, they are an important agricultural species worldwide. In addition, pigs are useful as a non-primate biomedical model organism, especially for the study of complex traits (e.g. obesity, cardiovascular disease, and arthritis) and for xenotransplantation experiments.

The first draft genome was released in 2012 by the Swine Genome Sequencing Consortium, using sequence derived from a single Duroc sow (Duroc 2-14). Assembly 10.2 contains approximately 2.6 Gb of sequence and 21,000 protein-coding genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome 13395
Chromosome 23653
Chromosome 32491
Chromosome 42173
Chromosome 52048
Chromosome 63752
Chromosome 72448
Chromosome 81406
Chromosome 92272
Chromosome 10898
Chromosome 11688
Chromosome 121966
Chromosome 132723
Chromosome 142450
Chromosome 151602
Chromosome 16656
Chromosome 171136
Chromosome 18859
Chromosome X1456
Mitochondrion16
Unplaced
2528
Chromosome Y115

Publications

  1. "Complete nucleotide sequence of pig (Sus scrofa) mitochondrial genome and dating evolutionary divergence within artiodactyla."
    Lin C.S., Sun Y.L., Liu C.Y., Yang P.C., Chang L.C., Cheng I.C., Mao S.J.T., Huang M.C.
    Gene 1999:107-114(1999) [PubMed] [Europe PMC] [Abstract]
  2. Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
  3. Datahose
    Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases
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