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Overview

StatusReference proteome
Proteinsi40,707
Gene counti - Download one protein sequence per gene (FASTA)
Proteome IDiUP000008227
Taxonomy9823 - Sus scrofa
StrainDuroc
Last modifiedMay 26, 2018
Genome assembly and annotationi GCA_000003025.6 from Ensembl

Sus scrofa, the domestic pig, is a member of the Artiodactyla (even-toed ungulates). First domesticated around 10,000 years ago, they are an important agricultural species worldwide. In addition, pigs are useful as a non-primate biomedical model organism, especially for the study of complex traits (e.g. obesity, cardiovascular disease, and arthritis) and for xenotransplantation experiments.

The first draft genome was released in 2012 by the Swine Genome Sequencing Consortium, using sequence derived from a single Duroc sow (Duroc 2-14). Assembly 10.2 contains approximately 2.6 Gb of sequence and 21,000 protein-coding genes.

Componentsi

Component nameGenome Accession(s)
Proteins
Chromosome 13394
Chromosome 23652
Chromosome 32491
Chromosome 42172
Chromosome 52048
Chromosome 63750
Chromosome 72446
Chromosome 81406
Chromosome 92272
Chromosome 10898
Chromosome 11688
Chromosome 121965
Chromosome 132722
Chromosome 142450
Chromosome 151602
Chromosome 16656
Chromosome 171136
Chromosome 18859
Chromosome X1455
Mitochondrion16
Unplaced
2530
Chromosome Y109

Publications

  1. Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
  2. Datahose
    Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases
  3. "Complete nucleotide sequence of pig (Sus scrofa) mitochondrial genome and dating evolutionary divergence within artiodactyla."
    Lin C.S., Sun Y.L., Liu C.Y., Yang P.C., Chang L.C., Cheng I.C., Mao S.J.T., Huang M.C.
    Gene 1999:107-114(1999) [PubMed] [Europe PMC] [Abstract]
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