Proteomes - Sus scrofa (Pig)
Overview
| Status | Reference proteome |
| Proteinsi | 40,707 |
| Proteome IDi | UP000008227 |
| Taxonomy | 9823 - Sus scrofa |
| Strain | Duroc |
| Last modified | May 26, 2018 |
| Genome assembly and annotationi | GCA_000003025.6 from Ensembl |
Sus scrofa, the domestic pig, is a member of the Artiodactyla (even-toed ungulates). First domesticated around 10,000 years ago, they are an important agricultural species worldwide. In addition, pigs are useful as a non-primate biomedical model organism, especially for the study of complex traits (e.g. obesity, cardiovascular disease, and arthritis) and for xenotransplantation experiments.
The first draft genome was released in 2012 by the Swine Genome Sequencing Consortium, using sequence derived from a single Duroc sow (Duroc 2-14). Assembly 10.2 contains approximately 2.6 Gb of sequence and 21,000 protein-coding genes.
Componentsi
| Chromosome 1 | 3394 | ||
| Chromosome 2 | 3652 | ||
| Chromosome 3 | 2491 | ||
| Chromosome 4 | 2172 | ||
| Chromosome 5 | 2048 | ||
| Chromosome 6 | 3750 | ||
| Chromosome 7 | 2446 | ||
| Chromosome 8 | 1406 | ||
| Chromosome 9 | 2272 | ||
| Chromosome 10 | 898 | ||
| Chromosome 11 | 688 | ||
| Chromosome 12 | 1965 | ||
| Chromosome 13 | 2722 | ||
| Chromosome 14 | 2450 | ||
| Chromosome 15 | 1602 | ||
| Chromosome 16 | 656 | ||
| Chromosome 17 | 1136 | ||
| Chromosome 18 | 859 | ||
| Chromosome X | 1455 | ||
| Mitochondrion | 16 | ||
| Unplaced | 2530 | ||
| Chromosome Y | 109 |
Publications
- Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
- Datahose
Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases - "Complete nucleotide sequence of pig (Sus scrofa) mitochondrial genome and dating evolutionary divergence within artiodactyla."
Lin C.S., Sun Y.L., Liu C.Y., Yang P.C., Chang L.C., Cheng I.C., Mao S.J.T., Huang M.C.
Gene 1999:107-114(1999) [PubMed] [Europe PMC] [Abstract]
