Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 48,329
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008225
Taxonomy9483 - Callithrix jacchus
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_011100555.1 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (M) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment, and the name of the taxonomic lineage dataset used.</p> C:95.4%[S:53.4%,D:42%],F:1%,M:3.6%,n:13780 primates_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Callithrix jacchus is also known as the common marmoset or the cotton eared marmoset. Marmosets are social animals and can create large groups with social hierarchy. They can be susceptible to disease which can quickly spread due to their social nature. As a result of their small body size and distinctive physiology, they are an ideal non-human primate model. They have been employed in research on immunity, reproductive biology, brain function and drug toxicity.

The genome sequence was derived from a total of 6X coverage from a female marmoset originating from the Southwest National Primate Research Center and serves as the reference genome. The C. jacchus genome is distributed over 22 pairs of autosomes and two sex chromosomes and is 2.9 Gb in size coding for just over 30,000 genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 13392
Chromosome 22812
Chromosome 32177
Chromosome 42770
Chromosome 54132
Chromosome 62284
Chromosome 73054
Chromosome 81932
Chromosome 92561
Chromosome 102743
Chromosome 112986
Chromosome 122355
Chromosome 131532
Chromosome 141647
Chromosome 151864
Chromosome 161204
Chromosome 171077
Chromosome 181132
Chromosome 19950
Chromosome 20824
Chromosome 21543
Chromosome 222194
Chromosome X1891
Chromosome Y71
Unplaced
189
Mitochondrion13

Publications

  1. "Callithrix jacchus mitochondrion, complete genome, except for D-loop."
    Sato M., Toyoda A., Saitou N., Kitano T.
    Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases
  2. Warren W., Ye L., Minx P., Worley K., Gibbs R., Wilson R.K.
    Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again