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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 42,828
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008225
Taxonomy9483 - Callithrix jacchus
Last modifiedDecember 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_002754865.1 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:95.6%[S:53.4%,D:42.2%],F:0.8%,M:3.5%,n:13780 primates_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Callithrix jacchus is also known as the common marmoset or the cotton eared marmoset. Marmosets are social animals and can create large groups with social hierarchy. They can be susceptible to disease which can quickly spread due to their social nature. As a result of their small body size and distinctive physiology, they are an ideal non-human primate model. They have been employed in research on immunity, reproductive biology, brain function and drug toxicity.

The genome sequence was derived from a total of 6X coverage from a female marmoset originating from the Southwest National Primate Research Center and serves as the reference genome. The C. jacchus genome is distributed over 22 pairs of autosomes and two sex chromosomes and is 2.9 Gb in size coding for just over 30,000 genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 10
Chromosome 20
Chromosome 30
Chromosome 40
Chromosome 50
Chromosome 60
Chromosome 70
Chromosome 80
Chromosome 90
Chromosome 100
Chromosome 110
Chromosome 120
Chromosome 130
Chromosome 140
Chromosome 150
Chromosome 160
Chromosome 170
Chromosome 180
Chromosome 190
Chromosome 200
Chromosome 210
Chromosome 220
Chromosome X0
Chromosome Y0
Unplaced
42815
Mitochondrion13

Publications

  1. "Callithrix jacchus mitochondrion, complete genome, except for D-loop."
    Sato M., Toyoda A., Saitou N., Kitano T.
    Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases
  2. Warren W., Ye L., Minx P., Worley K., Gibbs R., Wilson R.K.
    Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
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