Proteomes - Callithrix jacchus (White-tufted-ear marmoset)
Overview
Status | Reference proteome |
Proteinsi | 48,329 |
Proteome IDi | UP000008225 |
Taxonomy | 9483 - Callithrix jacchus |
Genome assembly and annotationi | GCA_011100555.1 from Ensembl full |
Buscoi | C:95.4%[S:53.4%,D:42%],F:1%,M:3.6%,n:13780 primates_odb10 |
Completenessi | Standard |
Callithrix jacchus is also known as the common marmoset or the cotton eared marmoset. Marmosets are social animals and can create large groups with social hierarchy. They can be susceptible to disease which can quickly spread due to their social nature. As a result of their small body size and distinctive physiology, they are an ideal non-human primate model. They have been employed in research on immunity, reproductive biology, brain function and drug toxicity.
The genome sequence was derived from a total of 6X coverage from a female marmoset originating from the Southwest National Primate Research Center and serves as the reference genome. The C. jacchus genome is distributed over 22 pairs of autosomes and two sex chromosomes and is 2.9 Gb in size coding for just over 30,000 genes.
Componentsi
Chromosome 1 | 3392 | |||
Chromosome 2 | 2812 | |||
Chromosome 3 | 2177 | |||
Chromosome 4 | 2770 | |||
Chromosome 5 | 4132 | |||
Chromosome 6 | 2284 | |||
Chromosome 7 | 3054 | |||
Chromosome 8 | 1932 | |||
Chromosome 9 | 2561 | |||
Chromosome 10 | 2743 | |||
Chromosome 11 | 2986 | |||
Chromosome 12 | 2355 | |||
Chromosome 13 | 1532 | |||
Chromosome 14 | 1647 | |||
Chromosome 15 | 1864 | |||
Chromosome 16 | 1204 | |||
Chromosome 17 | 1077 | |||
Chromosome 18 | 1132 | |||
Chromosome 19 | 950 | |||
Chromosome 20 | 824 | |||
Chromosome 21 | 543 | |||
Chromosome 22 | 2194 | |||
Chromosome X | 1891 | |||
Chromosome Y | 71 | |||
Unplaced | 189 | |||
Mitochondrion | 13 |